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165 commits

Author SHA1 Message Date
James Fellows Yates
59af7f0eee Delete SHH profiles due to decommissioning 2021-08-20 10:15:39 +02:00
Rogan Grant
2af0f4a774 Added link to NU Genomics markdown 2021-07-28 13:03:59 -05:00
Barry digby
2b6e80561a Merge branch 'master' of https://github.com/nf-core/configs into 2021-07-27 17:13:17 +01:00
Barry digby
04c0da5a2f nuig confg (lugh) 2021-07-27 17:05:27 +01:00
Maxime U. Garcia
30e058abf0
Merge branch 'master' into master_kraken 2021-07-20 09:26:56 +02:00
Gisela Gabernet
e2088a008d
Merge branch 'master' into master 2021-07-03 12:24:42 +02:00
ggabernet
ee2e8392ab add aws_tower profile 2021-07-03 12:17:21 +02:00
Edmund Miller
2a958f5ce3
docs: Add sysbio 2021-06-16 21:19:38 -05:00
ikeller
af1e57027d edit config and readme 2021-05-19 09:46:07 +02:00
Barry digby
8340e89768 nuig.config first commit 2021-04-28 17:28:01 +01:00
Alexander Peltzer
c12c373969
Merge pull request #235 from aunderwo/cambridge 
Add Cambridge University HPC config
 2021-04-25 10:40:56 +02:00
Anthony Underwood
e1b1402f50
Add Cambridge to README 2021-04-24 13:22:54 +01:00
Anthony Underwood
5aadc5ec0e
Add Sanger to README 2021-04-24 13:21:19 +01:00
Phil Ewels
c7e4ea25f5
Update README.md 2021-04-14 23:30:17 +02:00
Phil Ewels
2f343868ad
Apply suggestions from code review 
Co-authored-by: Maxime Garcia <max.u.garcia@gmail.com>
 2021-04-13 22:52:31 +02:00
MaxUlysse
3918e0aa9d feat: remove kraken profile 2021-04-13 15:14:14 +02:00
Phil Ewels
2afb4f0ad6
Don't recommend setting --custom_config_base manually 2021-04-13 14:37:54 +02:00
James A. Fellows Yates
095cd483e6
Update README.md 2021-04-07 20:43:31 +02:00
James A. Fellows Yates
033f81734a
Make a bit more explicitly exactly what you have to add/update 2021-04-07 20:32:44 +02:00
James A. Fellows Yates
beae329b29
Add docs as to what exactly you have to do when adding new config 2021-04-07 20:24:55 +02:00
James A. Fellows Yates
161c3a33d4
Merge branch 'master' into eva 2021-04-07 19:28:16 +02:00
James A. Fellows Yates
832edaa450
Merge branch 'master' into eva 2021-04-06 17:51:46 +02:00
James A. Fellows Yates
504c10d6ff
Update README.md 2021-04-06 17:50:25 +02:00
phue
8fc60e2e70 add config for biohpc_gen 2021-03-29 19:25:58 +02:00
Asaf Peer
93bde78faa added JAX conf 2021-03-21 06:47:52 -04:00
James Fellows Yates
537f52a640 Add MPI-EVA profile 2021-02-14 17:50:20 +01:00
Charles Plessy
1608b36dcf Institutional profile for Okinawa Institute of Science and Technology 2021-02-02 17:40:10 +09:00
Åshild J. Vågene
765a2e0b7e
Update README.md 2021-01-21 11:55:00 +01:00
Åshild J. Vågene
22e6a60db1
Update README.md 2021-01-21 00:22:13 +01:00
Åshild J. Vågene
a6f316b58b
Update README.md 2021-01-21 00:21:13 +01:00
lecorguille
c974972585 Add ABiMS - side files 2020-10-23 00:12:02 +02:00
James A. Fellows Yates
a1c5dc5fde
Update README.md 2020-09-03 20:22:27 +02:00
Adrian
5b890d571a adding icr_davros to list 2020-06-26 13:40:15 +01:00
Phil Ewels
cd9fbb22dc
Merge pull request #161 from ewels/uct_hpc 
Update UCT hex -> hpc
 2020-06-22 09:18:43 +02:00
Phil Ewels
29f5fa6ce4 uct_hpc docs, readme 2020-06-17 15:22:42 +02:00
Phil Ewels
17824d2d62 Merge czbiohub_aws_highpriority profile into czbiohub_aws 2020-06-16 15:20:39 +02:00
Alexander Peltzer
0efa9f248e
Add BI to main readme.md 2020-05-28 10:12:50 +02:00
MaxUlysse
50a44d037b better docs and organisation of giles 2020-04-09 17:02:36 +02:00
Daniel Lundin
e77cd38092 Adding ampliseq/UPPMAX doc to README.md 2020-03-31 15:42:25 +02:00
MaxUlysse
4a7f98a83b update TOC 2020-03-11 15:41:58 +01:00
MaxUlysse
6be1716797 revert * to - changes 2020-03-11 15:39:36 +01:00
MaxUlysse
d4bea56f52 add munin/rnafusion specific docs + markdownlint 2020-03-11 14:23:23 +01:00
Harshil Patel
d7564ff6e1
Merge pull request #135 from Emiller88/utd 
feat: add initial ganymede config
 2020-03-10 14:59:02 +00:00
marcel-keller
55c17a1854
Update README.md 2020-03-10 11:09:30 +02:00
Edmund Miller
1c62395332
docs(utd_ganymede): add initial documentation 2020-03-09 20:07:46 -05:00
Evan Floden
d8ad376f71
Merge branch 'master' into master 2020-03-06 10:29:50 +00:00
Alexander Peltzer
59a787b179
Merge pull request #122 from marchoeppner/ccga-config 
Removing old CCGA profile from docs and linting
 2020-03-06 11:17:08 +01:00
mseybold
48400b8863
Update RADME.md 
fixed link to cfc.md
 2020-03-06 11:14:27 +01:00
Evan Floden
8a9d3ad8a0 First commit of Google Cloud config 2020-03-06 05:47:29 +00:00
Marc Hoeppner
6c5a5c8bcb Removing old CCGA profile from docs and linting 
Removing CCGA profile from master config

Removing CCGA profile from master config
 2020-02-24 12:16:33 +01:00
Maxime Garcia
2144a1dc04
Apply suggestions from code review 2020-02-20 17:19:30 +01:00
Maxime Garcia
08e2804b37
Merge branch 'master' into Uppmax 2020-02-20 17:18:46 +01:00
MaxUlysse
aa905cd645 add UPPMAX specific sarek config 2020-02-20 17:14:18 +01:00
Harshil Patel
ef8534d481
Update README.md 2020-02-11 11:57:04 +00:00
marchoeppner
0830203b70 Adding new CCGA Med Cluster to profiles 
Updating README and fixing linting errors in CCGA_MED profile

Fixing order in profile queue and removed leading slash from readme for ccga profile docs

Fixing order in profile queue and removed leading slash from readme for ccga profile docs
 2020-02-11 11:12:51 +01:00
Alexander Peltzer
ecc850fd83
Omit this in TOC 2019-12-11 16:13:15 +01:00
Alexander Peltzer
a6d08ed646
Adjust custom pipeline config for ampliseq on BINAC 2019-12-11 16:09:44 +01:00
James A. Fellows Yates
71b47e3efa
Updated README to include EAGER specific configs 2019-12-10 11:39:24 +01:00
MaxUlysse
cdbdbee0eb replace -profile uppmax_devel by -profile uppmax,devel 2019-12-05 11:49:44 +01:00
Maxime Garcia
2669401a72
Merge branch 'master' into sarek 2019-11-27 13:27:43 +01:00
MaxUlysse
752fca0530 fix level of hostname 2019-11-27 13:25:52 +01:00
MaxUlysse
7f61d2f81b fix TOC 2019-11-27 13:18:39 +01:00
MaxUlysse
8a73e7f2f8 better explanation 2019-11-27 13:16:08 +01:00
Alexander Peltzer
da922b8005
Fix README 2019-11-26 15:45:33 +01:00
Alexander Peltzer
5806cd14e8
Merge branch 'master' of https://github.com/nf-core/configs 2019-11-26 15:36:07 +01:00
Alexander Peltzer
9cb5137ef2
Better description 2019-11-26 15:12:42 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Maxime Garcia
68c709432f
Apply suggestions from code review 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-11-26 14:17:32 +01:00
Maxime Garcia
f4115bc1a9
Update README.md 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-11-26 14:10:05 +01:00
MaxUlysse
209763620a update README 2019-11-26 11:48:29 +01:00
Maxime Garcia
29f0442c3a Update README.md 
Co-Authored-By: James A. Fellows Yates <jfy133@users.noreply.github.com>
 2019-11-26 11:48:29 +01:00
MaxUlysse
283abcece4 update docs 2019-11-26 11:25:29 +01:00
MaxUlysse
25f6ab6dd9 add docs 2019-11-26 11:25:29 +01:00
Alexander Peltzer
aeb2fb6dc0
Fix all the markdownlinting errors 2019-11-26 00:48:17 +01:00
Alexander Peltzer
64a3240a51
Fix linting 2019-11-26 00:29:04 +01:00
Alexander Peltzer
b084b9ad3c
Adds in GitHub Actions tests 2019-11-26 00:25:49 +01:00
noirot
9e5b76827f add genotoul in README.md 2019-11-25 16:37:00 +01:00
MaxUlysse
cb1c2eacd0 Z->S 2019-11-19 16:36:51 +01:00
MaxUlysse
08a6b74825 add new profile to be shared: awsbatch 2019-11-19 14:16:06 +01:00
Alexander Peltzer
3b6c9d0360
Fix denbi docs 2019-11-11 12:28:45 +01:00
phue
5a9dbe5d7c MENDEL is no more 
the cluster is no longer operational, was replaced by CBE
 2019-10-28 14:11:34 +01:00
Anthony Bretaudeau
1f2786c78f add genouest cluster 2019-10-16 18:15:04 +02:00
phue
5e257e7e9a add cbe profile 2019-09-22 16:45:09 +02:00
Martin Proks
da2a9047b0
fix: added kraken to the list (#64) 2019-08-05 14:59:36 +02:00
drpatelh
daf1b9dcd2 Fix type in uppmax-devel 2019-07-31 22:09:30 +01:00
drpatelh
840a97ed68 Clean up and alphabetasize 2019-07-31 21:52:16 +01:00
Remi Planel
1c0d596582 Merge remote-tracking branch 'upstream/master' 2019-07-30 16:15:20 +02:00
Remi Planel
f9a2baf614 Add link to Pasteur doc 2019-07-30 16:10:33 +02:00
marchoeppner
7d5de651aa
Update README.md 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-07-29 12:45:08 +02:00
marchoeppner
b31db18dfb Adding config file for CCGA dx cluster 2019-07-29 12:08:07 +02:00
Alexander Peltzer
515e9484de
Merge pull request #44 from drpatelh/dev 
Add proper nf-core logo
 2019-06-01 12:36:57 +02:00
drpatelh
ac804859f4 Add nf-core logo 2019-05-31 00:47:06 +01:00
Tobias Schraink
b6c1d3ba51 added bigpurple and prince doc links in README 2019-04-18 14:23:17 -04:00
Phil Ewels
1191863e1c Removed params.config_profile_name, added params.hostnames 2019-03-13 17:19:34 +01:00
Phil Ewels
1e2c0c3e04
Merge pull request #29 from apeltzer/master 
iGenomes Rollout on "Binac" too
 2019-03-11 18:26:19 +01:00
Phil Ewels
ef1aeafef6
Remove incorrect comment in code example 2019-03-08 16:41:47 +01:00
Alexander Peltzer
c8c150d67c Add the TravisCI badge as we have tests now 2019-03-08 13:39:25 +01:00
Phil Ewels
d115909343 Tyop 2019-03-05 16:53:59 +01:00
Phil Ewels
e0ba8e6f07 Tweak the readme 2019-03-05 16:28:10 +01:00
Phil Ewels
9fb5715c4c Added support for new params.custom_config_base option 2019-03-05 16:12:39 +01:00