Nicolas Vannieuwkerke
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8621db3440
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added the profile to nfcore_custom
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2022-05-20 09:21:46 +02:00 |
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Nicolas Vannieuwkerke
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2f74c91145
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prettier
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2022-05-20 09:18:33 +02:00 |
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Nicolas Vannieuwkerke
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cc86e6b270
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Added the VSC UGent profile
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2022-05-20 09:12:18 +02:00 |
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Sarah Guinchard
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be9711731a
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Merge pull request #375 from nf-core/ifb_core-config-update
Ifb core config update
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2022-05-13 14:45:44 +02:00 |
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Sofia Stamouli
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44402cf28e
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Merge pull request #373 from genomic-medicine-sweden/taxprofiler_hasta
Add hasta config for taxprofiler
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2022-05-12 15:23:26 +02:00 |
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sofstam
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ca4cdcffee
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Fix typo
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2022-05-12 15:07:30 +02:00 |
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sofstam
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b1deb0abce
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Update README.md
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2022-05-12 14:56:52 +02:00 |
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Sarah Guinchard
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3538f8511a
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removed comment
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2022-05-12 11:02:42 +02:00 |
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Sarah Guinchard
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84457cc655
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Update documentation
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2022-05-12 11:01:36 +02:00 |
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sofstam
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54b3cda34d
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Add review suggestion
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2022-05-12 11:00:26 +02:00 |
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Sarah Guinchard
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6bb7c1a422
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Update config file with queue & correct ressources
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2022-05-12 10:55:00 +02:00 |
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sofstam
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c59149d64c
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Update docs for hasta config
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2022-05-12 10:47:03 +02:00 |
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James A. Fellows Yates
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4a50fd40e7
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Merge pull request #374 from jfy133/taxprofiler
Add taxprofiler pipeline sepcific config for EVA
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2022-05-12 10:14:41 +02:00 |
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James Fellows Yates
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e1f780d976
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Add taxprofiler for eVA
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2022-05-12 07:54:17 +01:00 |
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sofstam
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5bc6ed90bd
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Add hasta config for taxprofiler
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2022-05-11 11:13:31 +02:00 |
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Thiseas C. Lamnidis
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65d07a3ead
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Merge pull request #372 from nf-core/TCLamnidis-patch-1
Update eva.config
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2022-05-06 15:53:03 +02:00 |
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Thiseas C. Lamnidis
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d09f5fc116
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Update eva.config
eigenstrat_snp_coverage also loads pandas
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2022-05-06 15:12:04 +02:00 |
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James A. Fellows Yates
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8fbfcfe256
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Merge pull request #371 from jfy133/master
Rename custom log file for EVA
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2022-05-06 14:02:03 +02:00 |
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James A. Fellows Yates
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95d18270e8
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Update eva.config
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2022-05-06 13:57:11 +02:00 |
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Harshil Patel
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15c938d05b
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Merge pull request #370 from drpatelh/google
Update retry strategy for preemptible instances on GCP
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2022-05-05 11:22:36 +01:00 |
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Harshil Patel
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20c826fd50
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Update retry strategy for preemptible instances on GCP
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2022-05-05 11:10:05 +01:00 |
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Thiseas C. Lamnidis
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a543a3ebc6
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Merge pull request #369 from TCLamnidis/master
missing bracket in eager eva.config
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2022-05-04 13:14:10 +02:00 |
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Thiseas C. Lamnidis
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209601f782
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missing bracket
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2022-05-04 13:08:13 +02:00 |
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James A. Fellows Yates
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c85342a9c9
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Merge pull request #368 from TCLamnidis/master
Update eva.config
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2022-05-04 12:32:04 +02:00 |
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Thiseas C. Lamnidis
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a42c4344ad
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Exclude bionode 06 for software versions
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2022-05-03 18:30:42 +02:00 |
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Thiseas C. Lamnidis
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08edd19d67
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Merge pull request #1 from TCLamnidis/TCLamnidis-patch-1
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2022-05-03 17:46:54 +02:00 |
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Thiseas C. Lamnidis
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79e227aa4e
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Update eva.config
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2022-05-03 16:42:21 +02:00 |
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Thiseas C. Lamnidis
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085726d081
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Update eva.config
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2022-05-03 16:36:05 +02:00 |
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Thiseas C. Lamnidis
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4592969613
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memory for get_software_versions in MB.
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2022-05-03 16:30:04 +02:00 |
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Thiseas C. Lamnidis
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79ad571319
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Update eva.config
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2022-05-03 16:25:48 +02:00 |
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Thiseas C. Lamnidis
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04226692fe
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Update eva.config
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2022-05-03 16:21:35 +02:00 |
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Thiseas C. Lamnidis
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57095fe79f
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Update eva.config
Set max heap size for java jobs in `get_software_versions`.
Limited OpenBLAS threading for python jobs that use numpy/pandas.
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2022-05-03 16:12:20 +02:00 |
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James A. Fellows Yates
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d1c1b467c1
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Merge pull request #366 from jfy133/master
Add more memory to get_software_versions for eva @ EAGER
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2022-05-02 14:54:26 +02:00 |
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James A. Fellows Yates
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b5d9b79377
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Merge branch 'nf-core:master' into master
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2022-05-02 13:59:18 +02:00 |
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James A. Fellows Yates
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bf658abc77
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Update eva.config
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2022-05-02 13:59:13 +02:00 |
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James Fellows Yates
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4885b672b1
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Prettier
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2022-04-25 11:46:32 +02:00 |
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James A. Fellows Yates
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b2d6fb6f5e
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Merge pull request #365 from rajewski/master
Cedars-Sinai HPC
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2022-04-25 10:44:33 +02:00 |
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Alex Rajewski
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d261b3df78
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add cedars-sinai
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2022-04-22 10:29:22 -07:00 |
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Alex Rajewski
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aa2c3e256b
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add cedars-sinai
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2022-04-22 10:27:50 -07:00 |
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Alex Rajewski
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c60d73b565
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add Cedars-Sinai HPC
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2022-04-22 10:26:32 -07:00 |
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Alex Rajewski
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7d6482c652
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Merge pull request #1 from rajewski/patch-1
usage notes
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2022-04-22 10:24:33 -07:00 |
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Alex Rajewski
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766eb450be
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usage notes
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2022-04-22 10:23:19 -07:00 |
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Alex Rajewski
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69d1a14894
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basic Cedars-Sinai HPC config file
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2022-04-22 10:17:13 -07:00 |
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James A. Fellows Yates
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c1425c6c01
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Merge pull request #364 from jfy133/eva-update
Update eager @ eva.config to allow retry on post-processing FASTQ
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2022-04-22 11:47:10 +02:00 |
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James A. Fellows Yates
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a086878c0b
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Update eva.config
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2022-04-22 10:47:04 +02:00 |
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Maxime U. Garcia
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e9d93d62e0
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Merge pull request #362 from nf-core/praveenraj2018-patch-1
Update: sentieon version
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2022-04-07 12:52:33 +02:00 |
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Praveen Raj S
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edaad1cd18
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Update: sentieon version
Sentieon version has been updated to 202112.02.
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2022-04-07 12:36:01 +02:00 |
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James A. Fellows Yates
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d49b21efdc
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Merge pull request #361 from jfy133/master
Re-add accidently removed BWA bionode exclusions EAGER @ EVA
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2022-03-31 14:11:54 +02:00 |
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James A. Fellows Yates
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44238471cf
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Update eva.config
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2022-03-31 13:12:50 +02:00 |
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James A. Fellows Yates
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f172cce8b2
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Merge pull request #360 from jfy133/master
Re-add bash bin specification for EVA
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2022-03-31 12:58:06 +02:00 |
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