437 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
James A. Fellows Yates	8747be8120	More tweaks, nextflow appears to add a little extra?	2019-12-06 19:27:16 +01:00
James A. Fellows Yates	5c6760b2f0	Tweak back again	2019-12-06 19:25:07 +01:00
James A. Fellows Yates	46f6d20a77	Put parameters back to correct levels	2019-12-06 19:13:29 +01:00
James A. Fellows Yates	18931763fa	Add space?	2019-12-06 19:11:08 +01:00
James A. Fellows Yates	f59443daf0	Update shh.config	2019-12-06 19:09:20 +01:00
James A. Fellows Yates	1ab1370872	Try to make resources satisfiable	2019-12-06 19:06:05 +01:00
James A. Fellows Yates	6e596d1730	Fix stupid wrong bracket typo -.-	2019-12-06 18:37:39 +01:00
jfy133	e8b4675692	Cleanup and tweaking	2019-12-06 13:17:31 +01:00
James A. Fellows Yates	0033b74e4e	Update shh.config	2019-12-05 18:08:39 +01:00
James A. Fellows Yates	dc0f1dfb40	Update shh.config	2019-12-05 17:58:49 +01:00
James A. Fellows Yates	b1a8b45aa0	Maybe typo?	2019-12-05 17:52:53 +01:00
James A. Fellows Yates	ab6c5f05ac	Merge pull request #7 from nf-core/master ... syncing	2019-12-05 17:37:17 +01:00
James A. Fellows Yates	0467b44f21	Merge pull request #103 from jfy133/master ... EAGER Pipeline specific config for SHH	2019-12-05 17:21:18 +01:00
jfy133	1650080b6e	Linting	2019-12-05 17:03:07 +01:00
jfy133	731372dac2	Added SHH specific EAGER configuration	2019-12-05 17:01:10 +01:00
James A. Fellows Yates	0a3821ce78	Merge pull request #6 from nf-core/master ... Syncing	2019-12-05 16:14:52 +01:00
Alexander Peltzer	9cdb915efb	Merge pull request #101 from jfy133/master ... Condensing SHH profile(s) with sub-profiles	2019-12-05 12:51:31 +01:00
James A. Fellows Yates	842642a2bb	Apply suggestions from code review ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-12-05 12:23:36 +01:00
James A. Fellows Yates	678a3841b6	Update conf/shh.config ... Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-12-05 12:23:06 +01:00
jfy133	3fc1377ff2	Remove mysterious new line	2019-12-05 12:16:01 +01:00
jfy133	41a795f996	Fixed github actions test	2019-12-05 12:14:01 +01:00
jfy133	54dafbcfa3	Condensing SHH profiles following https://github.com/nf-core/configs/pull/100	2019-12-05 12:09:11 +01:00
Alexander Peltzer	657345fa70	Merge pull request #99 from nf-core/adjust_cfc_mem ... Lowered max. memory for cfc	2019-11-28 13:35:47 +01:00
Sabrina Krakau	2eed8f7429	Lowered max. memory for cfc	2019-11-28 12:49:02 +01:00
Alexander Peltzer	fd68a2fbfb	Merge pull request #98 from nf-core/olgabot-patch-1 ... Set awsqueue parameter properly	2019-11-28 12:36:21 +01:00
Olga Botvinnik	f57e00e87d	Set awsqueue parameter properly	2019-11-27 15:57:09 -08:00
Sabrina Krakau	a7ac981cca	Merge pull request #97 from apeltzer/master ... Mini adjustment for `highmem` queue on denbi	2019-11-27 14:58:14 +01:00
Alexander Peltzer	4f77eae5cf	Mini adjustment for highmem queue on denbi	2019-11-27 14:23:01 +01:00
Maxime Garcia	64ff62de2c	Merge pull request #85 from MaxUlysse/sarek ... Adding a pipeline specific config for a specific system	2019-11-27 13:38:45 +01:00
Maxime Garcia	2669401a72	Merge branch 'master' into sarek	2019-11-27 13:27:43 +01:00
MaxUlysse	752fca0530	fix level of hostname	2019-11-27 13:25:52 +01:00
MaxUlysse	7f61d2f81b	fix TOC	2019-11-27 13:18:39 +01:00
MaxUlysse	8a73e7f2f8	better explanation	2019-11-27 13:16:08 +01:00
Alexander Peltzer	5e0e3e0567	Merge pull request #96 from jfy133/master ... Splitting SHH config to one per cluster	2019-11-27 12:06:54 +01:00
Alexander Peltzer	54719c4761	Merge pull request #95 from ggabernet/master ... Update max memory for cfc profile	2019-11-26 21:21:07 +01:00
James A. Fellows Yates	c725c71e4d	Merge branch 'master' into master	2019-11-26 20:34:42 +01:00
jfy133	e1c8c86d70	Updated core config	2019-11-26 20:26:59 +01:00
jfy133	c89ca84244	Updated github actions test - typo fix	2019-11-26 20:24:23 +01:00
jfy133	e6bf470962	Updated github actions test	2019-11-26 20:23:04 +01:00
jfy133	6f40c13473	Split shh config for each cluster	2019-11-26 20:20:17 +01:00
Patrick Hüther	8a9c321e44	Merge pull request #90 from phue/cbe_iGenomes ... cbe: roll out iGenomes	2019-11-26 18:15:30 +01:00
phue	672f025639	cbe: add documentation about iGenomes	2019-11-26 18:09:20 +01:00
phue	88b5be3060	Merge branch 'master' of https://github.com/nf-core/configs into cbe_iGenomes	2019-11-26 18:08:43 +01:00
ggabernet	834f4b4179	updated memory cfc config	2019-11-26 17:30:41 +01:00
Gisela Gabernet	55d8e8aca8	Merge pull request #1 from nf-core/master ... update to nf-core	2019-11-26 17:12:53 +01:00
Alexander Peltzer	ee99d7f2d4	Merge pull request #94 from apeltzer/master ... Mini Cosmetic Fixes for README	2019-11-26 16:24:30 +01:00
Alexander Peltzer	b756ce54a4	Add genotoul fix	2019-11-26 16:09:08 +01:00
Alexander Peltzer	81739a3907	Merge pull request #93 from jfy133/master ... Updated max resources for SHH SDAG	2019-11-26 15:56:39 +01:00
Alexander Peltzer	da922b8005	Fix README	2019-11-26 15:45:33 +01:00
Alexander Peltzer	5806cd14e8	Merge branch 'master' of https://github.com/nf-core/configs	2019-11-26 15:36:07 +01:00