James A. Fellows Yates
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92424ee2c3
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Merge pull request #328 from jfy133/eva-update
eager @ EVA walltime whole year
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2022-02-10 17:23:04 +01:00 |
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James Fellows Yates
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88ddc9eee7
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fffff
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2022-02-10 11:34:57 +01:00 |
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James Fellows Yates
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d7d0f5cecc
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Change base time
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2022-02-10 11:32:49 +01:00 |
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James Fellows Yates
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dbd78f8075
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Re add .
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2022-02-10 11:26:18 +01:00 |
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James Fellows Yates
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dd94895f16
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remove quotes
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2022-02-10 11:22:45 +01:00 |
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James Fellows Yates
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39c2d9b25b
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Oops
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2022-02-10 11:19:16 +01:00 |
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James Fellows Yates
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c0ee3225ad
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Add times for 365d
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2022-02-10 11:02:52 +01:00 |
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James A. Fellows Yates
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192839c8be
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Merge pull request #327 from nf-core/TCLamnidis-patch-2
Removed all time limits
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2022-02-10 10:22:53 +01:00 |
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Thiseas C. Lamnidis
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fa4075c2a0
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Removed all time limits
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2022-02-10 10:00:18 +01:00 |
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James A. Fellows Yates
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64355b84d2
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Merge pull request #325 from jfy133/eva-update
Read add empty BAM exit code for qualimap 255 for eager @ EVA
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2022-02-08 11:28:36 +01:00 |
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James A. Fellows Yates
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2b06293f64
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Read add empty BAM exit code for qualitmap 255
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2022-02-08 11:15:17 +01:00 |
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James A. Fellows Yates
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8d286e3b69
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Merge pull request #324 from jfy133/eva-update
New attempt of workaround SGE + Java incompatibility for eager @ EVA
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2022-02-06 20:02:03 +01:00 |
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James A. Fellows Yates
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8c5a54ac9f
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Update conf/pipeline/eager/eva.config
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2022-02-06 19:37:53 +01:00 |
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James A. Fellows Yates
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aa525c6ebf
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Allow exit code 1 retry for all java processes
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2022-02-06 09:07:53 +01:00 |
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Stevin Wilson
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dbb71161c5
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Added ARTIC v4.1 primer set information
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2022-02-04 15:31:51 -05:00 |
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Patrick Hüther
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8ff6f302b4
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Merge pull request #320 from rbpisupati/cbe-singularity
cbe: update config and docs
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2022-02-04 10:40:16 +01:00 |
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phue
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7bf6f284fa
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cbe: lower the threshold for switching to m queue
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2022-02-04 10:33:00 +01:00 |
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phue
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49810a69b3
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cbe: add gpu support
just in case.. note that this will need --nv in containerOptions in order to mount cuda libs into the container
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2022-02-04 10:31:58 +01:00 |
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phue
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a6dd3aa0f1
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cbe: update recommended nextflow version in docs
otherwise, the new anaconda requirements will cause conflicts
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2022-02-04 10:21:52 +01:00 |
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phue
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52b6f7da21
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update anaconda module
not sure why a binary distribution needs a buildenv at all, but well
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2022-02-04 10:18:59 +01:00 |
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phue
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c3db683535
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Merge branch 'master' of github.com:nf-core/configs into cbe-singularity
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2022-02-04 10:14:52 +01:00 |
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phue
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b5ab4a8258
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Revert "changes to cbe module loading"
This reverts commit 7c1c4c7fa4 .
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2022-02-04 10:13:12 +01:00 |
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James A. Fellows Yates
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81fe720b00
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Update eva.config
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2022-02-04 09:31:33 +01:00 |
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James A. Fellows Yates
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86a9042eac
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Update eva.config
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2022-02-04 09:25:01 +01:00 |
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Combiz Khozoie
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81a273c730
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Update imperial_mb.config
Dropped support for pqmedbio-large which is not currently available.
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2022-02-03 18:31:02 +00:00 |
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Combiz Khozoie
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2bdf5863d9
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Update imperial.config
Removed my contact details. Users can request help on the nf-core slack.
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2022-02-03 18:28:11 +00:00 |
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Combiz Khozoie
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731f86e7f1
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Update imperial_mb.config
Removed my contact details. Users can request help on the nf-core slack.
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2022-02-03 18:27:49 +00:00 |
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Combiz Khozoie
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453080f282
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Update imperial.config
Removed my contact details. Users can request help on the nf-core slack.
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2022-02-03 18:26:30 +00:00 |
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James A. Fellows Yates
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50aafc6410
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Update eva.config
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2022-02-03 17:03:10 +01:00 |
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James A. Fellows Yates
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e02196d6ad
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Update eva.config
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2022-02-03 17:02:34 +01:00 |
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James A. Fellows Yates
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0e41349324
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Update eva.config
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2022-02-03 17:01:54 +01:00 |
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rbpisupati
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7c1c4c7fa4
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changes to cbe module loading
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2022-02-02 22:42:13 +01:00 |
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Michael Borg
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cc380ce9a1
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Update mpcdf.config
Added polling frequencies to the config as requested by MPCDF admin. Also updated the number of (real) cores on Raven.
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2022-02-02 13:33:03 +01:00 |
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James Fellows Yates
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2562a2f563
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Remove virtual free
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2022-02-02 08:06:00 +01:00 |
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James A. Fellows Yates
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8739aabbf0
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Bump markduplicates by default
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2022-02-02 08:00:13 +01:00 |
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Austyn Trull
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1c9e1bf8a1
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Fixing syntax in cheaha profile
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2022-01-28 14:18:57 -06:00 |
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Lara Ianov
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f876227a38
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added note on screen, conda, and interactive partitions
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2022-01-28 12:18:11 -06:00 |
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Lara Ianov
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9c0d550222
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max_memory increase to reflect largemem
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2022-01-28 11:45:13 -06:00 |
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Austyn Trull
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06541411dd
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Initial commit of cheaha profile
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2022-01-28 11:37:42 -06:00 |
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Harshil Patel
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9792226f5c
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Update genomes.config
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2022-01-27 12:45:41 +00:00 |
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Praveen Raj S
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5c1afd56bf
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Added genome parameter
Added genome parameter to the config file
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2022-01-20 22:25:31 +01:00 |
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Harshil Patel
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c49abc2e61
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Merge pull request #316 from drpatelh/nextclade
Add --nextclade_dataset params
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2022-01-17 17:35:31 +00:00 |
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Harshil Patel
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cd6b8e0f17
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Add --nextclade_dataset params
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2022-01-17 16:51:55 +00:00 |
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Harshil Patel
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a680207b55
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Merge pull request #315 from drpatelh/nextclade
Add Nextclade genome details to viralrecon genome config
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2022-01-17 11:46:47 +00:00 |
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Harshil Patel
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f26c465bd4
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Add Nextclade genome details to viralrecon genome config
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2022-01-17 11:27:10 +00:00 |
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James A. Fellows Yates
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4546e0f389
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Merge pull request #314 from jfy133/master
Update eager@eva to add java buffer for bbduk
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2022-01-14 07:40:56 +01:00 |
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James A. Fellows Yates
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5fd5c43906
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Update eva.config
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2022-01-14 07:03:05 +01:00 |
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Maxime U. Garcia
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61682f33b3
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Merge pull request #310 from nf-core/praveenraj2018-patch-1
Updated sentieon version through a new module file
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2022-01-10 12:04:20 +01:00 |
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ameynert
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bfa7e0f8d7
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Merge pull request #313 from nf-core/ameynert-patch-1
Added memory & cluster options specification for eddie sarek config
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2022-01-06 10:38:13 +00:00 |
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ameynert
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0f56588acc
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Added memory & cluster options specification for eddie sarek config
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2022-01-06 10:15:34 +00:00 |
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