170 commits

Author	SHA1	Message	Date
Marc Trunjer Kusk Nielsen	463df26c72	Merge branch 'nf-core:master' into computerome	2021-09-10 14:47:05 +02:00
theoportlock	b240142cc3	Adds rosalind configuration	2021-09-08 14:33:39 +02:00
Rogan Grant	54298ca0f7	Merge branch 'nf-core:master' into master	2021-09-04 15:37:03 -05:00
Marc Trunjer Kusk Nielsen	e576b1a7dd	Update README.md ... Add computerome	2021-08-31 14:32:56 +02:00
Phil Ewels	3d77ffdf55	Merge pull request #230 from nf-core/docs-custom_config_base	2021-08-23 19:34:30 +02:00
James Fellows Yates	59af7f0eee	Delete SHH profiles due to decommissioning	2021-08-20 10:15:39 +02:00
Rogan Grant	2af0f4a774	Added link to NU Genomics markdown	2021-07-28 13:03:59 -05:00
Barry digby	2b6e80561a	Merge branch 'master' of https://github.com/nf-core/configs into	2021-07-27 17:13:17 +01:00
Barry digby	04c0da5a2f	nuig confg (lugh)	2021-07-27 17:05:27 +01:00
Maxime U. Garcia	30e058abf0	Merge branch 'master' into master_kraken	2021-07-20 09:26:56 +02:00
Gisela Gabernet	e2088a008d	Merge branch 'master' into master	2021-07-03 12:24:42 +02:00
ggabernet	ee2e8392ab	add aws_tower profile	2021-07-03 12:17:21 +02:00
Edmund Miller	2a958f5ce3	docs: Add sysbio	2021-06-16 21:19:38 -05:00
ikeller	af1e57027d	edit config and readme	2021-05-19 09:46:07 +02:00
Barry digby	8340e89768	nuig.config first commit	2021-04-28 17:28:01 +01:00
Alexander Peltzer	c12c373969	Merge pull request #235 from aunderwo/cambridge ... Add Cambridge University HPC config	2021-04-25 10:40:56 +02:00
Anthony Underwood	e1b1402f50	Add Cambridge to README	2021-04-24 13:22:54 +01:00
Anthony Underwood	5aadc5ec0e	Add Sanger to README	2021-04-24 13:21:19 +01:00
Phil Ewels	c7e4ea25f5	Update README.md	2021-04-14 23:30:17 +02:00
Phil Ewels	2f343868ad	Apply suggestions from code review ... Co-authored-by: Maxime Garcia <max.u.garcia@gmail.com>	2021-04-13 22:52:31 +02:00
MaxUlysse	3918e0aa9d	feat: remove kraken profile	2021-04-13 15:14:14 +02:00
Phil Ewels	2afb4f0ad6	Don't recommend setting --custom_config_base manually	2021-04-13 14:37:54 +02:00
James A. Fellows Yates	095cd483e6	Update README.md	2021-04-07 20:43:31 +02:00
James A. Fellows Yates	033f81734a	Make a bit more explicitly exactly what you have to add/update	2021-04-07 20:32:44 +02:00
James A. Fellows Yates	beae329b29	Add docs as to what exactly you have to do when adding new config	2021-04-07 20:24:55 +02:00
James A. Fellows Yates	161c3a33d4	Merge branch 'master' into eva	2021-04-07 19:28:16 +02:00
James A. Fellows Yates	832edaa450	Merge branch 'master' into eva	2021-04-06 17:51:46 +02:00
James A. Fellows Yates	504c10d6ff	Update README.md	2021-04-06 17:50:25 +02:00
phue	8fc60e2e70	add config for biohpc_gen	2021-03-29 19:25:58 +02:00
Asaf Peer	93bde78faa	added JAX conf	2021-03-21 06:47:52 -04:00
James Fellows Yates	537f52a640	Add MPI-EVA profile	2021-02-14 17:50:20 +01:00
Charles Plessy	1608b36dcf	Institutional profile for Okinawa Institute of Science and Technology	2021-02-02 17:40:10 +09:00
Åshild J. Vågene	765a2e0b7e	Update README.md	2021-01-21 11:55:00 +01:00
Åshild J. Vågene	22e6a60db1	Update README.md	2021-01-21 00:22:13 +01:00
Åshild J. Vågene	a6f316b58b	Update README.md	2021-01-21 00:21:13 +01:00
lecorguille	c974972585	Add ABiMS - side files	2020-10-23 00:12:02 +02:00
James A. Fellows Yates	a1c5dc5fde	Update README.md	2020-09-03 20:22:27 +02:00
Adrian	5b890d571a	adding icr_davros to list	2020-06-26 13:40:15 +01:00
Phil Ewels	cd9fbb22dc	Merge pull request #161 from ewels/uct_hpc ... Update UCT hex -> hpc	2020-06-22 09:18:43 +02:00
Phil Ewels	29f5fa6ce4	uct_hpc docs, readme	2020-06-17 15:22:42 +02:00
Phil Ewels	17824d2d62	Merge czbiohub_aws_highpriority profile into czbiohub_aws	2020-06-16 15:20:39 +02:00
Alexander Peltzer	0efa9f248e	Add BI to main readme.md	2020-05-28 10:12:50 +02:00
MaxUlysse	50a44d037b	better docs and organisation of giles	2020-04-09 17:02:36 +02:00
Daniel Lundin	e77cd38092	Adding ampliseq/UPPMAX doc to README.md	2020-03-31 15:42:25 +02:00
MaxUlysse	4a7f98a83b	update TOC	2020-03-11 15:41:58 +01:00
MaxUlysse	6be1716797	revert * to - changes	2020-03-11 15:39:36 +01:00
MaxUlysse	d4bea56f52	add munin/rnafusion specific docs + markdownlint	2020-03-11 14:23:23 +01:00
Harshil Patel	d7564ff6e1	Merge pull request #135 from Emiller88/utd ... feat: add initial ganymede config	2020-03-10 14:59:02 +00:00
marcel-keller	55c17a1854	Update README.md	2020-03-10 11:09:30 +02:00
Edmund Miller	1c62395332	docs(utd_ganymede): add initial documentation	2020-03-09 20:07:46 -05:00
Evan Floden	d8ad376f71	Merge branch 'master' into master	2020-03-06 10:29:50 +00:00
Alexander Peltzer	59a787b179	Merge pull request #122 from marchoeppner/ccga-config ... Removing old CCGA profile from docs and linting	2020-03-06 11:17:08 +01:00
mseybold	48400b8863	Update RADME.md ... fixed link to cfc.md	2020-03-06 11:14:27 +01:00
Evan Floden	8a9d3ad8a0	First commit of Google Cloud config	2020-03-06 05:47:29 +00:00
Marc Hoeppner	6c5a5c8bcb	Removing old CCGA profile from docs and linting ... Removing CCGA profile from master config Removing CCGA profile from master config	2020-02-24 12:16:33 +01:00
Maxime Garcia	2144a1dc04	Apply suggestions from code review	2020-02-20 17:19:30 +01:00
Maxime Garcia	08e2804b37	Merge branch 'master' into Uppmax	2020-02-20 17:18:46 +01:00
MaxUlysse	aa905cd645	add UPPMAX specific sarek config	2020-02-20 17:14:18 +01:00
Harshil Patel	ef8534d481	Update README.md	2020-02-11 11:57:04 +00:00
marchoeppner	0830203b70	Adding new CCGA Med Cluster to profiles ... Updating README and fixing linting errors in CCGA_MED profile Fixing order in profile queue and removed leading slash from readme for ccga profile docs Fixing order in profile queue and removed leading slash from readme for ccga profile docs	2020-02-11 11:12:51 +01:00
Alexander Peltzer	ecc850fd83	Omit this in TOC	2019-12-11 16:13:15 +01:00
Alexander Peltzer	a6d08ed646	Adjust custom pipeline config for ampliseq on BINAC	2019-12-11 16:09:44 +01:00
James A. Fellows Yates	71b47e3efa	Updated README to include EAGER specific configs	2019-12-10 11:39:24 +01:00
MaxUlysse	cdbdbee0eb	replace -profile uppmax_devel by -profile uppmax,devel	2019-12-05 11:49:44 +01:00
Maxime Garcia	2669401a72	Merge branch 'master' into sarek	2019-11-27 13:27:43 +01:00
MaxUlysse	752fca0530	fix level of hostname	2019-11-27 13:25:52 +01:00
MaxUlysse	7f61d2f81b	fix TOC	2019-11-27 13:18:39 +01:00
MaxUlysse	8a73e7f2f8	better explanation	2019-11-27 13:16:08 +01:00
Alexander Peltzer	da922b8005	Fix README	2019-11-26 15:45:33 +01:00
Alexander Peltzer	5806cd14e8	Merge branch 'master' of https://github.com/nf-core/configs	2019-11-26 15:36:07 +01:00
Alexander Peltzer	9cb5137ef2	Better description	2019-11-26 15:12:42 +01:00
Alexander Peltzer	23f9fd2d73	Merge branch 'master' into master	2019-11-26 14:20:36 +01:00
Maxime Garcia	68c709432f	Apply suggestions from code review ... Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>	2019-11-26 14:17:32 +01:00
Maxime Garcia	f4115bc1a9	Update README.md ... Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>	2019-11-26 14:10:05 +01:00
MaxUlysse	209763620a	update README	2019-11-26 11:48:29 +01:00
Maxime Garcia	29f0442c3a	Update README.md ... Co-Authored-By: James A. Fellows Yates <jfy133@users.noreply.github.com>	2019-11-26 11:48:29 +01:00
MaxUlysse	283abcece4	update docs	2019-11-26 11:25:29 +01:00
MaxUlysse	25f6ab6dd9	add docs	2019-11-26 11:25:29 +01:00
Alexander Peltzer	aeb2fb6dc0	Fix all the markdownlinting errors	2019-11-26 00:48:17 +01:00
Alexander Peltzer	64a3240a51	Fix linting	2019-11-26 00:29:04 +01:00
Alexander Peltzer	b084b9ad3c	Adds in GitHub Actions tests	2019-11-26 00:25:49 +01:00
noirot	9e5b76827f	add genotoul in README.md	2019-11-25 16:37:00 +01:00
MaxUlysse	cb1c2eacd0	Z->S	2019-11-19 16:36:51 +01:00
MaxUlysse	08a6b74825	add new profile to be shared: awsbatch	2019-11-19 14:16:06 +01:00
Alexander Peltzer	3b6c9d0360	Fix denbi docs	2019-11-11 12:28:45 +01:00
phue	5a9dbe5d7c	MENDEL is no more ... the cluster is no longer operational, was replaced by CBE	2019-10-28 14:11:34 +01:00
Anthony Bretaudeau	1f2786c78f	add genouest cluster	2019-10-16 18:15:04 +02:00
phue	5e257e7e9a	add cbe profile	2019-09-22 16:45:09 +02:00
Martin Proks	da2a9047b0	fix: added kraken to the list (#64)	2019-08-05 14:59:36 +02:00
drpatelh	daf1b9dcd2	Fix type in uppmax-devel	2019-07-31 22:09:30 +01:00
drpatelh	840a97ed68	Clean up and alphabetasize	2019-07-31 21:52:16 +01:00
Remi Planel	1c0d596582	Merge remote-tracking branch 'upstream/master'	2019-07-30 16:15:20 +02:00
Remi Planel	f9a2baf614	Add link to Pasteur doc	2019-07-30 16:10:33 +02:00
marchoeppner	7d5de651aa	Update README.md ... Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>	2019-07-29 12:45:08 +02:00
marchoeppner	b31db18dfb	Adding config file for CCGA dx cluster	2019-07-29 12:08:07 +02:00
Alexander Peltzer	515e9484de	Merge pull request #44 from drpatelh/dev ... Add proper nf-core logo	2019-06-01 12:36:57 +02:00
drpatelh	ac804859f4	Add nf-core logo	2019-05-31 00:47:06 +01:00
Tobias Schraink	b6c1d3ba51	added bigpurple and prince doc links in README	2019-04-18 14:23:17 -04:00
Phil Ewels	1191863e1c	Removed params.config_profile_name, added params.hostnames	2019-03-13 17:19:34 +01:00
Phil Ewels	1e2c0c3e04	Merge pull request #29 from apeltzer/master ... iGenomes Rollout on "Binac" too	2019-03-11 18:26:19 +01:00