1495 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
phue	8fc60e2e70	add config for biohpc_gen	2021-03-29 19:25:58 +02:00
Gisela Gabernet	71a97ba316	Merge pull request #185 from ggabernet/master ... awsbatch config update	2021-03-28 20:59:40 +02:00
Phil Ewels	d34bc40841	UPPMAX: add to schema_ignore_params	2021-03-26 15:22:57 +01:00
Phil Ewels	eccc9ea8d5	Define params.project and params.clusterOptions in uppmax config	2021-03-26 15:20:32 +01:00
Santiago Lacalle	e2c583d558	Remove "/rdsgpfs" ... "/rdsgpfs" symlink will not be present on all nodes. Without that mount the container creation will fail.	2021-03-25 12:38:15 +00:00
Alexander Peltzer	26b5904df1	Merge pull request #218 from asafpr/master ... added jax singularity cache dir	2021-03-24 17:39:03 +01:00
Asaf Peer	922ab87eb0	added jax singularity cache dir	2021-03-24 11:25:47 -04:00
ameynert	6215414ecf	Merge pull request #217 from ameynert/master ... Addition of eddie institutional profile	2021-03-24 14:05:07 +00:00
ameynert	3a8e54f153	Removed sneaky trailing whitespace.	2021-03-24 13:58:10 +00:00
ameynert	a0d42f5153	Fixed code blocks for markdown linting	2021-03-24 13:55:31 +00:00
ameynert	2d90c919aa	Added eddie profile to github workflow tests	2021-03-24 13:51:37 +00:00
Phil Ewels	8e6223d1bd	Update nfcore_custom.config	2021-03-24 12:36:50 +01:00
Phil Ewels	bfab371c94	Merge branch 'master' into master	2021-03-24 12:36:15 +01:00
Phil Ewels	158402eddf	Update nfcore_custom.config	2021-03-24 12:26:49 +01:00
ameynert	aeb0ffcfde	Spacing fix ... Co-authored-by: Maxime Garcia <maxime.garcia@scilifelab.se>	2021-03-24 11:26:09 +00:00
ameynert	2a8ae2b214	Update eddie.md	2021-03-24 11:12:41 +00:00
ameynert	96fe6185a0	IGMM-specific docs	2021-03-24 11:01:41 +00:00
ameyner2	00d984d918	Merge branch 'master' of github.com:ameynert/configs	2021-03-24 10:46:43 +00:00
ameyner2	da8cf2f207	Added pipeline-specific config files for rnaseq and sarek	2021-03-24 10:46:26 +00:00
Asaf Peer	9b2d5bfead	Merge pull request #216 from asafpr/master ... Added JAX conf	2021-03-24 03:31:14 -04:00
ameynert	791f3c95f3	Pipeline specific configs moving to confs/pipeline	2021-03-23 16:07:07 +00:00
Alexander Peltzer	5988c51361	Merge pull request #211 from DoaneAS/master ... Adding WCM.config for Weill Cornell Medicine cluster	2021-03-23 14:58:27 +01:00
Phil Ewels	a9aae577ef	Merge pull request #215 from Emiller88/ganymede-update	2021-03-22 19:18:02 +01:00
Edmund Miller	a6975cdd4e	fix(ganymede): large => high ... Co-authored-by: drpatelh <drpatelh@users.noreply.github.com>	2021-03-22 12:42:56 -05:00
Edmund Miller	34ccce9531	fix(ganymede): Add process resources ... Trimgalore though it can be a bottom neck, doesn't require the 1 big memory node we have and can be run on the genomics queue.	2021-03-21 21:47:59 -05:00
Edmund Miller	4570718b12	fix(ganymede): Add TMPDIR and SINGULARITY_CACHEDIR env variables	2021-03-21 21:45:39 -05:00
Asaf Peer	30c864e112	added JAX conf	2021-03-21 06:49:11 -04:00
Asaf Peer	93bde78faa	added JAX conf	2021-03-21 06:47:52 -04:00
ameynert	b48136a62e	Added pipeline-specific config files	2021-03-18 12:55:03 +00:00
ameynert	af6a6b1060	Details on running on eddie ... Removed Conda support, Singularity by default. Added login and screen session on wild west node options.	2021-03-18 12:48:48 +00:00
ameyner2	bb388fb88b	Merge branch 'master' of github.com:ameynert/configs	2021-03-18 12:32:11 +00:00
ameyner2	059d353a1e	Removed Conda, added automount Singularity	2021-03-18 12:31:56 +00:00
Rike	6221b67bcf	Give Strelka a complete compute node	2021-03-18 11:11:02 +01:00
Rike	b1846af9d3	reduce mapping resource further to compute node	2021-03-18 11:10:00 +01:00
FriederikeHanssen	67c93a4743	Update conf/pipeline/sarek/cfc.config ... Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>	2021-03-18 11:06:38 +01:00
ameynert	4ad6bb2bec	Singularity info	2021-03-17 14:50:40 +00:00
Rike	b70097e495	remove new line	2021-03-17 15:46:18 +01:00
Harshil Patel	2ce1e2a9cc	Create rnaseq.config	2021-03-17 12:32:47 +00:00
ameyner2	d4cd07c646	Typo in beforescript	2021-03-17 09:21:26 +00:00
Maxime Garcia	ec11a9a951	Merge pull request #212 from noirot/master ... Add IFB config	2021-03-16 16:55:38 +01:00
Noirot Céline	e3216ccf79	typo	2021-03-16 16:00:56 +01:00
Noirot Céline	cc17045914	Add institution	2021-03-16 15:58:29 +01:00
Noirot Céline	7e9f83ee81	Add IFB config	2021-03-16 15:54:19 +01:00
ameyner2	cfe13fe6c1	Fixed typo & added singularity tmpdir	2021-03-15 15:42:30 +00:00
Ashley S Doane	6343a7f87c	Update wcm.md	2021-03-11 14:01:07 -05:00
Ashley S Doane	d630bcfb6c	Create wcm.md	2021-03-11 13:59:55 -05:00
Ashley S Doane	e7f8189dfc	Create wcm.config	2021-03-11 13:52:11 -05:00
Rike	bb124a9be8	Reduce vc to run on compute	2021-03-11 16:11:41 +01:00
FriederikeHanssen	79ddbe1fea	Add missing bracket	2021-03-11 09:29:03 +01:00
FriederikeHanssen	0057132e02	remove check_reource statement	2021-03-11 09:27:08 +01:00