93 commits

Author	SHA1	Message	Date
MaxUlysse	99afe86ea9	update docs	2019-12-05 15:18:01 +01:00
MaxUlysse	cdbdbee0eb	replace -profile uppmax_devel by -profile uppmax,devel	2019-12-05 11:49:44 +01:00
Maxime Garcia	2669401a72	Merge branch 'master' into sarek	2019-11-27 13:27:43 +01:00
James A. Fellows Yates	c725c71e4d	Merge branch 'master' into master	2019-11-26 20:34:42 +01:00
jfy133	6f40c13473	Split shh config for each cluster	2019-11-26 20:20:17 +01:00
phue	672f025639	cbe: add documentation about iGenomes	2019-11-26 18:09:20 +01:00
Alexander Peltzer	81739a3907	Merge pull request #93 from jfy133/master ... Updated max resources for SHH SDAG	2019-11-26 15:56:39 +01:00
James A. Fellows Yates	89506a653c	Remove empty lines in block quotes for linting	2019-11-26 15:34:25 +01:00
James A. Fellows Yates	12ec22838c	Specified max sources currently at SDAG limits (exceeds cdag)	2019-11-26 15:29:03 +01:00
noirot	07b1f17d6a	correct md to pass linter	2019-11-26 15:02:06 +01:00
Noirot Céline	3ed206b7a7	Update docs/genotoul.md ... ok Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-11-26 14:52:45 +01:00
Noirot Céline	288294994e	Update docs/genotoul.md ... ok Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>	2019-11-26 14:52:32 +01:00
noirot	e95196451f	correct md to pass linter	2019-11-26 14:47:23 +01:00
noirot	42c949db95	correct md to pass linter	2019-11-26 14:43:42 +01:00
Alexander Peltzer	23f9fd2d73	Merge branch 'master' into master	2019-11-26 14:20:36 +01:00
Noirot Céline	42d99e7006	Update genotoul.md	2019-11-26 13:18:34 +01:00
Maxime Garcia	f6c2e4c65f	Update docs/pipeline/sarek/munin.md ... Update conf/pipeline/sarek/munin.config testing out module and containers collision	2019-11-26 11:57:51 +01:00
MaxUlysse	25d4e92935	update docs	2019-11-26 11:55:36 +01:00
Maxime Garcia	b029ccaa59	Update docs/pipeline/sarek/munin.md ... Update conf/pipeline/sarek/munin.config	2019-11-26 11:48:11 +01:00
MaxUlysse	283abcece4	update docs	2019-11-26 11:25:29 +01:00
MaxUlysse	cd1d0b5f8f	Add specific sarek config base, munin specific sarek config and docs ... rename file improve configs remove unnecessary params	2019-11-26 11:25:29 +01:00
Alexander Peltzer	aeb2fb6dc0	Fix all the markdownlinting errors	2019-11-26 00:48:17 +01:00
Noirot Céline	ed4436c1a6	Merge branch 'master' into master	2019-11-25 16:24:12 +01:00
noirot	db51c49b2f	Add genotoul config	2019-11-25 14:54:25 +01:00
MaxUlysse	08a6b74825	add new profile to be shared: awsbatch	2019-11-19 14:16:06 +01:00
Alexander Peltzer	d2603a134e	Add in denbi cloud configs	2019-11-11 12:26:19 +01:00
Phil Ewels	6790dbd4a3	Merge pull request #82 from arontommi/dev ... documentation on how to fix bianca "Requested node configuration is not available" problem	2019-11-08 15:07:07 +01:00
Phil Ewels	5e7d13df89	Update uppmax.md	2019-11-08 10:59:34 +01:00
arontommi	99f4d9b9bd	documentation on how to fix bianca cluster configuration problem	2019-11-06 13:10:09 +01:00
maxibor	47a7d57db4	update shh doc	2019-10-28 16:09:00 +01:00
phue	5a9dbe5d7c	MENDEL is no more ... the cluster is no longer operational, was replaced by CBE	2019-10-28 14:11:34 +01:00
Alexander Peltzer	5348b8c609	Revert "BINAC SMP / Short / Long Updates"	2019-10-28 13:12:31 +01:00
Alexander Peltzer	b5b2dd817f	Merge all	2019-10-27 13:24:45 +01:00
Anthony Bretaudeau	883a761651	add link	2019-10-16 18:45:26 +02:00
Anthony Bretaudeau	1f2786c78f	add genouest cluster	2019-10-16 18:15:04 +02:00
phue	9b3fda36f6	update singularity version ... singularity/3.1.0 is not available anymore	2019-10-10 21:22:19 +02:00
phue	5e257e7e9a	add cbe profile	2019-09-22 16:45:09 +02:00
MaxUlysse	f69524d59a	feat: update docs	2019-08-07 11:56:10 +02:00
MaxUlysse	332ba0dadb	fix: update and rearrange munin configuration file and docs	2019-08-07 11:10:48 +02:00
Martin Proks	c583aa0233	Added kraken config (#15) ... * Added kraken template * docs: updated some info * fix: updated igenomes_base path	2019-08-05 11:19:05 +02:00
Alexander Peltzer	82ffedf895	Drop aquila	2019-07-30 18:53:36 +02:00
Alexander Peltzer	4e48d4cc62	Fix remaining points by drpatelh	2019-07-30 18:53:00 +02:00
Alexander Peltzer	35c715ca3b	Merge remote-tracking branch 'upstream/master'	2019-07-30 16:53:19 +02:00
Remi Planel	1c0d596582	Merge remote-tracking branch 'upstream/master'	2019-07-30 16:15:20 +02:00
Remi Planel	be28a34839	Updat Pasteur doc	2019-07-30 16:12:30 +02:00
Remi Planel	64e78a3dc1	Update the doc	2019-07-30 15:17:25 +02:00
Remi Planel	6f264ac2ca	Add pasteur profile doc	2019-07-30 15:15:30 +02:00
marchoeppner	b74f020f14	Update docs/ccga_dx.md ... Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>	2019-07-29 12:45:30 +02:00
marchoeppner	71bc98afae	Adding config file for CCGA dx cluster	2019-07-29 12:06:29 +02:00
Olga Botvinnik	474e98daaf	Merge branch 'master' into olgabot/czb-update	2019-07-09 16:02:25 -07:00