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Author	SHA1	Message	Date
Matthias Hörtenhuber	b98ab26662	fix markdownlint errors	2022-02-11 14:09:16 +01:00
Matthias Hörtenhuber	fcc856c8da	update node version for markdownlint	2022-02-11 11:03:18 +00:00
Combiz Khozoie	3ce32f50c4	Update imperial.config ... Moved params configs from internal profile to universal	2022-02-11 11:02:40 +00:00
Combiz Khozoie	683564de1b	Update main.yml ... Removed deprecated imperial medbio from GHA	2022-02-11 09:35:18 +00:00
Combiz Khozoie	8937699abe	Update README.md ... Added imperial docs link	2022-02-11 09:33:54 +00:00
Combiz Khozoie	f33bc965d6	Update nfcore_custom.config ... Removed deprecated medbio config	2022-02-11 09:32:50 +00:00
Combiz Khozoie	b99b74b2d3	Update imperial.config ... Fixed indent	2022-02-11 00:26:45 +00:00
Combiz Khozoie	c5e4ac2025	Update scflow.config ... Removed line corresponding to profile deprecated by change to internal profiles	2022-02-11 00:25:44 +00:00
Combiz Khozoie	34d9e7a967	Update imperial.md ... Updated docs to reflect use of internal profiles	2022-02-11 00:08:08 +00:00
Combiz Khozoie	5aa1abda26	Delete imperial_mb.md ... Deprecated in favour of internal profiles within the single imperial.config	2022-02-11 00:07:05 +00:00
Combiz Khozoie	14c7662762	Update imperial.md ... Updated docs to reflect restructuring for internal profiles	2022-02-10 23:49:43 +00:00
Combiz Khozoie	38a05a6531	Update imperial.config ... Reworked to use internal profiles for the Imperial HPC and the MedBio cluster.	2022-02-10 23:46:14 +00:00
Combiz Khozoie	e1d0bf0cd2	Delete imperial_mb.config ... Separate config for the medbio queue now deprecated in favour of an internal profile within the main imperial.config	2022-02-10 23:44:49 +00:00
Combiz Khozoie	fe5474a029	Update imperial.config ... Multiple process level updates reflecting the latest job sizing guidelines for the Imperial HPC	2022-02-10 23:02:47 +00:00
Harshil Patel	8fa6ab9b35	Merge pull request #323 from stevin-wilson/patch-1 ... Added ARTIC v4.1 primer set information	2022-02-10 19:17:47 +00:00
James A. Fellows Yates	92424ee2c3	Merge pull request #328 from jfy133/eva-update ... eager @ EVA walltime whole year	2022-02-10 17:23:04 +01:00
James Fellows Yates	88ddc9eee7	fffff	2022-02-10 11:34:57 +01:00
James Fellows Yates	d7d0f5cecc	Change base time	2022-02-10 11:32:49 +01:00
James Fellows Yates	dbd78f8075	Re add .	2022-02-10 11:26:18 +01:00
James Fellows Yates	dd94895f16	remove quotes	2022-02-10 11:22:45 +01:00
James Fellows Yates	39c2d9b25b	Oops	2022-02-10 11:19:16 +01:00
James Fellows Yates	c0ee3225ad	Add times for 365d	2022-02-10 11:02:52 +01:00
James A. Fellows Yates	192839c8be	Merge pull request #327 from nf-core/TCLamnidis-patch-2 ... Removed all time limits	2022-02-10 10:22:53 +01:00
Thiseas C. Lamnidis	fa4075c2a0	Removed all time limits	2022-02-10 10:00:18 +01:00
James A. Fellows Yates	64355b84d2	Merge pull request #325 from jfy133/eva-update ... Read add empty BAM exit code for qualimap 255 for eager @ EVA	2022-02-08 11:28:36 +01:00
James A. Fellows Yates	2b06293f64	Read add empty BAM exit code for qualitmap 255	2022-02-08 11:15:17 +01:00
James A. Fellows Yates	8d286e3b69	Merge pull request #324 from jfy133/eva-update ... New attempt of workaround SGE + Java incompatibility for eager @ EVA	2022-02-06 20:02:03 +01:00
James A. Fellows Yates	8c5a54ac9f	Update conf/pipeline/eager/eva.config	2022-02-06 19:37:53 +01:00
James A. Fellows Yates	aa525c6ebf	Allow exit code 1 retry for all java processes	2022-02-06 09:07:53 +01:00
Stevin Wilson	dbb71161c5	Added ARTIC v4.1 primer set information	2022-02-04 15:31:51 -05:00
Patrick Hüther	8ff6f302b4	Merge pull request #320 from rbpisupati/cbe-singularity ... cbe: update config and docs	2022-02-04 10:40:16 +01:00
phue	7bf6f284fa	cbe: lower the threshold for switching to m queue	2022-02-04 10:33:00 +01:00
phue	49810a69b3	cbe: add gpu support ... just in case.. note that this will need --nv in containerOptions in order to mount cuda libs into the container	2022-02-04 10:31:58 +01:00
phue	a6dd3aa0f1	cbe: update recommended nextflow version in docs ... otherwise, the new anaconda requirements will cause conflicts	2022-02-04 10:21:52 +01:00
phue	52b6f7da21	update anaconda module ... not sure why a binary distribution needs a buildenv at all, but well	2022-02-04 10:18:59 +01:00
phue	c3db683535	Merge branch 'master' of github.com:nf-core/configs into cbe-singularity	2022-02-04 10:14:52 +01:00
phue	b5ab4a8258	Revert "changes to cbe module loading" ... This reverts commit 7c1c4c7fa4.	2022-02-04 10:13:12 +01:00
James A. Fellows Yates	81fe720b00	Update eva.config	2022-02-04 09:31:33 +01:00
James A. Fellows Yates	86a9042eac	Update eva.config	2022-02-04 09:25:01 +01:00
Combiz Khozoie	81a273c730	Update imperial_mb.config ... Dropped support for pqmedbio-large which is not currently available.	2022-02-03 18:31:02 +00:00
Combiz Khozoie	2bdf5863d9	Update imperial.config ... Removed my contact details. Users can request help on the nf-core slack.	2022-02-03 18:28:11 +00:00
Combiz Khozoie	731f86e7f1	Update imperial_mb.config ... Removed my contact details. Users can request help on the nf-core slack.	2022-02-03 18:27:49 +00:00
Combiz Khozoie	453080f282	Update imperial.config ... Removed my contact details. Users can request help on the nf-core slack.	2022-02-03 18:26:30 +00:00
James A. Fellows Yates	50aafc6410	Update eva.config	2022-02-03 17:03:10 +01:00
James A. Fellows Yates	e02196d6ad	Update eva.config	2022-02-03 17:02:34 +01:00
James A. Fellows Yates	0e41349324	Update eva.config	2022-02-03 17:01:54 +01:00
rbpisupati	7c1c4c7fa4	changes to cbe module loading	2022-02-02 22:42:13 +01:00
Michael Borg	cc380ce9a1	Update mpcdf.config ... Added polling frequencies to the config as requested by MPCDF admin. Also updated the number of (real) cores on Raven.	2022-02-02 13:33:03 +01:00
James Fellows Yates	2562a2f563	Remove virtual free	2022-02-02 08:06:00 +01:00
James A. Fellows Yates	8739aabbf0	Bump markduplicates by default	2022-02-02 08:00:13 +01:00