1134 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Åshild J. Vågene	22e6a60db1	Update README.md	2021-01-21 00:22:13 +01:00
Åshild J. Vågene	a6f316b58b	Update README.md	2021-01-21 00:21:13 +01:00
Åshild J. Vågene	65831b73ef	Create ceh.md	2021-01-21 00:17:08 +01:00
Åshild J. Vågene	8a8f95e364	Update nfcore_custom.config	2021-01-20 23:47:58 +01:00
Åshild J. Vågene	c11c26f15f	Create ceh.config	2021-01-20 23:45:26 +01:00
James A. Fellows Yates	1c25cb033b	Add big_data profile	2021-01-19 13:53:01 +01:00
Patrick Hüther	b63a8b0554	Merge pull request #199 from rbpisupati/cbe-conda ... cbe: add conda module as fallback	2021-01-15 13:06:48 +01:00
rbpisupati	9b5ac5c89d	added anaconda module for cbe	2021-01-15 12:55:46 +01:00
James A. Fellows Yates	a4c55b3ea9	Fix time limit 0-9 typo	2021-01-06 10:44:12 +01:00
Combiz Khozoie	ea2fd4be94	Merge pull request #197 from combiz/imperial ... Added institutional configs for Imperial and Imperial MEDBIO. Added …	2020-12-18 16:33:17 +00:00
Combiz Khozoie	17cf4e3b35	fixed indents	2020-12-18 15:34:56 +00:00
Combiz Khozoie	3824403b4e	removed workDir from Imperial configs	2020-12-18 10:31:36 +00:00
Combiz Khozoie	4bb52358f5	updated Github Actions YML	2020-12-18 10:27:40 +00:00
Combiz Khozoie	a61992d144	Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO	2020-12-18 10:21:26 +00:00
Alexander Peltzer	65e2ff56d8	Merge pull request #195 from marcel-keller/patch-1 ... change of directory for conda environments	2020-12-09 14:35:00 +01:00
marcel-keller	c9ceaff3b3	change of directory for conda environments ... change of directory due to recent changes in our infrastructure	2020-12-09 15:11:21 +02:00
Maxime Garcia	2fb205264e	Merge pull request #192 from arontommi/dev ... Documentation for Bianca	2020-12-09 11:09:23 +01:00
emnilsson	8cc2fc5ecb	Merge pull request #193 from emnilsson/master ... Modified ampliseq-specific uppmax-config	2020-12-02 13:40:43 +01:00
Alexander Peltzer	99985c658f	Merge pull request #194 from marcel-keller/ebc ... Update ebc.config	2020-11-26 14:12:33 +01:00
marcel-keller	5590a9743a	Update ebc.config ... queueSize to 64	2020-11-26 15:05:25 +02:00
arontommi	ac108379cd	trailing spaces	2020-11-26 13:58:16 +01:00
arontommi	c2c7265518	fix linting errors	2020-11-26 13:47:47 +01:00
Emelie Nilsso	7095101652	Merge branch 'master' of https://github.com/nf-core/configs	2020-11-26 13:43:42 +01:00
Emelie Nilsso	febf38dd8e	Removed an old process so that only relevant processes are included	2020-11-26 13:38:47 +01:00
arontommi	6480aef1db	typo	2020-11-26 11:41:33 +01:00
arontommi	f84fbb8f89	typo	2020-11-26 11:39:51 +01:00
arontommi	e6bb7a4852	capital names	2020-11-26 11:37:59 +01:00
arontommi	5726ef3456	typo	2020-11-26 11:26:08 +01:00
arontommi	06469901fe	typo	2020-11-26 11:24:29 +01:00
arontommi	ebf754bf43	documentation for bianca	2020-11-26 09:53:51 +01:00
Phil Ewels	d134286487	Merge pull request #190 from ewels/uppmax-docs ... Better UPPMAX docs	2020-11-26 01:43:47 +01:00
Phil Ewels	e96455e180	Update docs/uppmax.md	2020-11-26 01:43:09 +01:00
Phil Ewels	d9a8009662	Better UPPMAX docs	2020-11-25 22:45:16 +01:00
Emelie Nilsso	d61ed01d2d	Updated process names according to ampliseq main.nf	2020-11-25 17:50:30 +01:00
Emelie Nilsso	37e7cfae2c	Removed unnecessary code that was used to troubleshoot	2020-11-24 07:14:23 +01:00
Emelie Nilsso	cd59bba83e	Merge branch 'master' of https://github.com/nf-core/configs	2020-11-24 07:10:05 +01:00
Emelie Nilsso	c47088cda2	Merge remote-tracking branch 'origin'	2020-11-23 21:34:08 +01:00
Emelie Nilsso	2ea06ffab8	Modified uppmax and ampliseq specific config to fit with the divided preparation of the database	2020-11-23 21:20:36 +01:00
James A. Fellows Yates	f3c7b36e3d	Merge pull request #189 from nf-core/TCLamnidis-patch-1 ... Move sdag queue specification block in sdag profile	2020-11-18 13:16:54 +01:00
Thiseas C. Lamnidis	71d1ff2226	Add params block to sdag queue ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2020-11-18 13:04:46 +01:00
Thiseas C. Lamnidis	da781907f2	Move sdag queue specification block in sdag profile	2020-11-17 19:45:06 +01:00
Harshil Patel	be9cb33ac1	Merge pull request #188 from andrewfrank/patch-1 ... Fix parameters in google.md	2020-11-12 17:12:41 +00:00
Andrew Frank	d70fc2605a	Fix parameters in google.md ... Change parameters from hyphens to underscores to accurately reflect google.config	2020-11-12 11:52:58 -05:00
James A. Fellows Yates	4dfacc1894	Merge pull request #13 from nf-core/master ... Sync latest changes	2020-11-10 16:34:16 +01:00
Maxime Borry	c95fd9d52f	Merge pull request #186 from jfy133/shh-singularity-runoptions ... Remove custom singularity runOptions from SHH config	2020-11-10 15:39:40 +01:00
James A. Fellows Yates	9d4d682867	Update shh.config	2020-11-10 15:14:03 +01:00
Gisela Gabernet Garriga	885f0ce5f6	awsbatch config update	2020-11-09 22:41:38 +01:00
Maxime Garcia	3cc3445549	Merge pull request #183 from abims-sbr/abims ... Add ABiMS	2020-10-23 09:57:20 +02:00
lecorguille	e3d733d87e	Add ABiMS - fix lint	2020-10-23 09:29:54 +02:00
lecorguille	4d03f72c78	Add ABiMS - last bits of doc	2020-10-23 09:27:12 +02:00