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Author	SHA1	Message	Date
MaxUlysse	9f74e88041	update file	2020-02-24 14:36:45 +01:00
MaxUlysse	aa905cd645	add UPPMAX specific sarek config	2020-02-20 17:14:18 +01:00
Daniel Straub	a5e183266e	Merge pull request #117 from nf-core/d4straub-patch-1 ... Cleanup config	2020-02-07 15:18:18 +01:00
Daniel Straub	b7be65a31e	Cleanup config	2020-02-07 14:53:43 +01:00
Alexander Peltzer	30735c3de7	Merge pull request #115 from nf-core/d4straub-patch-1 ... Update binac.config	2020-01-28 11:45:29 +01:00
Daniel Straub	7346bffdc8	Update binac.config ... Processes that ask for 128 Gb are queuing forever when on short queue, but executed when send to smp queue.	2020-01-28 08:48:34 +01:00
James A. Fellows Yates	28d7e4d4e8	Merge pull request #113 from jfy133/master ... Updates SHH specific nf-core/eager pipeline	2019-12-21 22:28:38 +01:00
James A. Fellows Yates	799f2d5788	Grammar tweak	2019-12-21 20:59:48 +01:00
James A. Fellows Yates	435a5892ea	Updated docs corresponding to 638758423a	2019-12-21 20:59:25 +01:00
James A. Fellows Yates	638758423a	Restricts MALT re-tries and hardcodes resources so cannot go above SDAG max	2019-12-21 20:55:54 +01:00
James A. Fellows Yates	5632a0631a	Merge pull request #8 from nf-core/master ... Syncing	2019-12-21 20:51:38 +01:00
Harshil Patel	01b7357d1d	Merge pull request #112 from drpatelh/master ... Change iGenomes path after fullish sync	2019-12-18 11:12:27 +00:00
drpatelh	bcb8950c2f	Change URL to website	2019-12-18 10:57:12 +00:00
drpatelh	be5ed21269	Update docs	2019-12-18 10:54:31 +00:00
drpatelh	67c231d05c	Change igenomes path	2019-12-18 10:54:23 +00:00
Harshil Patel	aadeea0ab9	Merge pull request #111 from drpatelh/master ... Update awsbatch.config	2019-12-12 14:32:59 +00:00
drpatelh	089b5b8e3b	Update config	2019-12-12 13:44:37 +00:00
drpatelh	0779d25255	Update docs	2019-12-12 13:02:51 +00:00
drpatelh	65c5668568	Update config	2019-12-12 13:02:44 +00:00
Maxime Garcia	d36172d4cf	Merge pull request #110 from MaxUlysse/MUNIN ... fix issue with withLabel selector	2019-12-12 13:03:23 +01:00
MaxUlysse	2bf66514c5	fix issue with withLabel selector	2019-12-12 11:50:10 +01:00
Alexander Peltzer	a4fa95150c	Merge pull request #109 from apeltzer/master ... TZ env for binac	2019-12-12 11:10:22 +01:00
Alexander Peltzer	ecc850fd83	Omit this in TOC	2019-12-11 16:13:15 +01:00
Alexander Peltzer	a6d08ed646	Adjust custom pipeline config for ampliseq on BINAC	2019-12-11 16:09:44 +01:00
Alexander Peltzer	49cd35918a	Remove whitespace	2019-12-11 15:59:58 +01:00
Alexander Peltzer	5e6981d0ee	Export TZ in binac config	2019-12-11 15:59:25 +01:00
Alexander Peltzer	271e20e306	Merge pull request #108 from nf-core/fix-env-binac ... Update envWhiteList for Binac Profile for testing purposes	2019-12-11 14:31:22 +01:00
Alexander Peltzer	ac90acf470	Update envWhiteList for Binac Profile for testing purposes ... Add envWhitelist for TZ to fix https://github.com/nf-core/ampliseq/issues/114	2019-12-11 14:26:57 +01:00
Alexander Peltzer	e429758e25	Merge pull request #107 from nf-core/pipelineconfigs_readme_update ... Update README to mention EAGER specific configs	2019-12-10 12:19:26 +01:00
James A. Fellows Yates	71b47e3efa	Updated README to include EAGER specific configs	2019-12-10 11:39:24 +01:00
James A. Fellows Yates	09bc644dcf	Merge pull request #106 from jfy133/master ... Fixes shh eager-specific profile	2019-12-06 20:02:59 +01:00
James A. Fellows Yates	0beb98696f	Merge branch 'master' into master	2019-12-06 19:31:24 +01:00
James A. Fellows Yates	8747be8120	More tweaks, nextflow appears to add a little extra?	2019-12-06 19:27:16 +01:00
James A. Fellows Yates	5c6760b2f0	Tweak back again	2019-12-06 19:25:07 +01:00
James A. Fellows Yates	46f6d20a77	Put parameters back to correct levels	2019-12-06 19:13:29 +01:00
Phil Ewels	4b0fd12752	Merge pull request #105 from nf-core/jfy133-patch-1 ... Wrong bracket typo fix -.-	2019-12-06 19:12:50 +01:00
James A. Fellows Yates	18931763fa	Add space?	2019-12-06 19:11:08 +01:00
James A. Fellows Yates	f59443daf0	Update shh.config	2019-12-06 19:09:20 +01:00
James A. Fellows Yates	1ab1370872	Try to make resources satisfiable	2019-12-06 19:06:05 +01:00
James A. Fellows Yates	6e596d1730	Fix stupid wrong bracket typo -.-	2019-12-06 18:37:39 +01:00
James A. Fellows Yates	b28e1a0905	Wrong bracket typo fix -.-	2019-12-06 18:34:18 +01:00
Alexander Peltzer	1f7940c2ee	Merge pull request #104 from jfy133/master ... Attempt to fix process specific configs with pipeline specific configs	2019-12-06 17:16:37 +01:00
jfy133	e8b4675692	Cleanup and tweaking	2019-12-06 13:17:31 +01:00
Maxime Garcia	9497b78149	Merge pull request #100 from MaxUlysse/UPPMAX ... Improve UPPMAX configs	2019-12-06 10:52:44 +01:00
Maxime Garcia	79528de92f	Update docs/uppmax.md ... Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>	2019-12-06 10:47:09 +01:00
Maxime Garcia	14864bb80b	Update conf/uppmax.config	2019-12-06 10:31:56 +01:00
Alexander Peltzer	da547b4ce3	Merge pull request #102 from phue/cbe_singularity ... cbe: load singularity/3.4.1	2019-12-06 10:21:55 +01:00
phue	fa777180e6	cbe: map hostname	2019-12-05 23:46:25 +01:00
James A. Fellows Yates	0033b74e4e	Update shh.config	2019-12-05 18:08:39 +01:00
James A. Fellows Yates	dc0f1dfb40	Update shh.config	2019-12-05 17:58:49 +01:00