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Author SHA1 Message Date
MaxUlysse
50a44d037b better docs and organisation of giles 2020-04-09 17:02:36 +02:00
Harshil Patel
6adc7342e9
Merge pull request #148 from MaxUlysse/viralrecon 
add viralrecon specific config
 2020-04-09 13:34:23 +01:00
Harshil Patel
4fd9b73cec
Update pipeline/viralrecon.config 2020-04-09 13:31:39 +01:00
Harshil Patel
290d0a2180
Update pipeline/viralrecon.config 2020-04-09 13:31:20 +01:00
MaxUlysse
19316ce852 add viralrecon specific config 2020-04-09 13:40:35 +02:00
Maxime Garcia
de5b7717ff
Merge pull request #147 from nf-core/MaxUlysse-patch-1 
Update uppmax.config
 2020-04-09 12:08:41 +02:00
Maxime Garcia
34dc18faf6
Update uppmax.config 2020-04-09 11:35:37 +02:00
Adrian Larkeryd
405801638a icr_davros sarek config description 2020-04-08 11:56:17 +01:00
Adrian Larkeryd
78be4b358e icr_davros igenomes base 2020-04-08 11:55:16 +01:00
Adrian Larkeryd
82965d25c8 hostname warning for davros 2020-04-08 11:54:34 +01:00
Maxime Garcia
d1ff87a416
Merge pull request #145 from bioatlas/master 
Adding UPPMAX specific config for ampliseq
 2020-03-31 15:46:21 +02:00
Daniel Lundin
e77cd38092 Adding ampliseq/UPPMAX doc to README.md 2020-03-31 15:42:25 +02:00
Daniel Lundin
e0f9374272
Update pipeline/ampliseq.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2020-03-31 15:33:19 +02:00
Daniel Lundin
5a557ed7d5
Update pipeline/ampliseq.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2020-03-31 15:33:12 +02:00
Daniel Lundin
79ef94de47
Update pipeline/ampliseq.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2020-03-31 15:33:04 +02:00
Daniel Lundin
c8de9be701 Adding UPPMAX specific config for ampliseq 2020-03-31 15:17:24 +02:00
Phil Ewels
554ab6673c
Merge pull request #144 from MaxUlysse/UPPMAX 
[UPPMAX] add s.* pattern for bianca cluster
 2020-03-30 17:01:38 +02:00
MaxUlysse
db2dd4458b Merge remote-tracking branch 'upstream/master' into UPPMAX 2020-03-30 16:41:08 +02:00
MaxUlysse
8b570507cd update s 2020-03-30 16:40:11 +02:00
Gisela Gabernet
15574ab849
Merge pull request #143 from ggabernet/master 
add cfc_dev profile
 2020-03-23 17:46:34 +01:00
ggabernet
fa01e6c5c1 add cfc_dev to test yml 2020-03-23 17:27:36 +01:00
ggabernet
d02e2b8a36 add cfc_dev and warning for binac and cfc 2020-03-23 17:22:02 +01:00
ggabernet
c81f693f73 add cfc_dev config 2020-03-23 17:16:34 +01:00
Olga Botvinnik
f414b4c52d
Merge pull request #142 from nf-core/olgabot-patch-1 
Add AaegL5.0 genome to czbiohub_aws
 2020-03-17 16:46:12 -07:00
Olga Botvinnik
52369ba6ad
Add AaegL5.0 config 2020-03-17 16:45:20 -07:00
Maxime Garcia
8b1835484e
Merge pull request #141 from nf-core/MaxUlysse-patch-1 
Update munin.config
 2020-03-12 17:31:09 +01:00
Maxime Garcia
123132d89a
Update munin.config 
fix typo
 2020-03-12 17:23:55 +01:00
Phil Ewels
5a3bdcca5b
Merge pull request #139 from Emiller88/utd 
fix(ganymede): use singularity/2.4.5
 2020-03-11 16:54:01 +00:00
Edmund Miller
034020e202
Apply suggestions from code review 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2020-03-11 16:45:20 +00:00
Maxime Garcia
a3934c84e0
Merge pull request #140 from MaxUlysse/Munin 
Update Munin specific configs
 2020-03-11 15:55:11 +01:00
Maxime Garcia
b6d52fdb89
Update conf/pipeline/sarek/munin.config 2020-03-11 15:48:29 +01:00
Maxime Garcia
0f34d757a9
Update munin.config 2020-03-11 15:48:17 +01:00
MaxUlysse
4a7f98a83b update TOC 2020-03-11 15:41:58 +01:00
MaxUlysse
6be1716797 revert * to - changes 2020-03-11 15:39:36 +01:00
MaxUlysse
d4bea56f52 add munin/rnafusion specific docs + markdownlint 2020-03-11 14:23:23 +01:00
MaxUlysse
7c60096952 update docs for munin/sarek specific config 2020-03-11 14:17:24 +01:00
MaxUlysse
250035e71d fix path to config files 2020-03-11 14:11:23 +01:00
MaxUlysse
d24a296a01 add munin/rnafusion specific config 2020-03-11 14:02:01 +01:00
MaxUlysse
dd1ddf864b update sarek munin config 2020-03-11 14:01:28 +01:00
Edmund Miller
cece853663
fix(ganymede): use singularity/2.4.5 
Our 3.2.1 doesn't work right with snakemake or nextflow
 2020-03-10 21:03:24 -05:00
Harshil Patel
d7564ff6e1
Merge pull request #135 from Emiller88/utd 
feat: add initial ganymede config
 2020-03-10 14:59:02 +00:00
Edmund Miller
c42bb07981
fix: Singularity => singularity 
For some reason ours are lowercase
 2020-03-10 09:55:17 -05:00
Edmund Miller
04f2fa1c5d
chore: add new config PR template 2020-03-10 09:49:31 -05:00
James A. Fellows Yates
d6e62cb1d0
Merge pull request #137 from marcel-keller/ebc 
Add EBC to README.md
 2020-03-10 10:18:33 +01:00
marcel-keller
55c17a1854
Update README.md 2020-03-10 11:09:30 +02:00
James A. Fellows Yates
e395007ba8
Add reference to EBC in README docs 2020-03-10 09:34:30 +01:00
James A. Fellows Yates
3d9e2288b7
Merge pull request #10 from nf-core/master 
Get latest changes
 2020-03-10 09:33:46 +01:00
Edmund Miller
b79f0f0a21
ci: add utd_gaymede to main 2020-03-09 20:11:52 -05:00
Edmund Miller
1c62395332
docs(utd_ganymede): add initial documentation 2020-03-09 20:07:46 -05:00
Edmund Miller
123c44c56d
feat: add initial ganymede config 2020-03-09 16:18:41 -05:00