Thiseas C. Lamnidis
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209601f782
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missing bracket
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2022-05-04 13:08:13 +02:00 |
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Thiseas C. Lamnidis
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a42c4344ad
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Exclude bionode 06 for software versions
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2022-05-03 18:30:42 +02:00 |
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Thiseas C. Lamnidis
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79e227aa4e
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Update eva.config
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2022-05-03 16:42:21 +02:00 |
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Thiseas C. Lamnidis
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085726d081
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Update eva.config
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2022-05-03 16:36:05 +02:00 |
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Thiseas C. Lamnidis
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4592969613
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memory for get_software_versions in MB.
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2022-05-03 16:30:04 +02:00 |
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Thiseas C. Lamnidis
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79ad571319
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Update eva.config
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2022-05-03 16:25:48 +02:00 |
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Thiseas C. Lamnidis
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04226692fe
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Update eva.config
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2022-05-03 16:21:35 +02:00 |
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Thiseas C. Lamnidis
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57095fe79f
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Update eva.config
Set max heap size for java jobs in `get_software_versions`.
Limited OpenBLAS threading for python jobs that use numpy/pandas.
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2022-05-03 16:12:20 +02:00 |
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James A. Fellows Yates
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b5d9b79377
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Merge branch 'nf-core:master' into master
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2022-05-02 13:59:18 +02:00 |
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James A. Fellows Yates
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bf658abc77
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Update eva.config
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2022-05-02 13:59:13 +02:00 |
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Alex Rajewski
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69d1a14894
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basic Cedars-Sinai HPC config file
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2022-04-22 10:17:13 -07:00 |
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James A. Fellows Yates
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c1425c6c01
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Merge pull request #364 from jfy133/eva-update
Update eager @ eva.config to allow retry on post-processing FASTQ
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2022-04-22 11:47:10 +02:00 |
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James A. Fellows Yates
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a086878c0b
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Update eva.config
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2022-04-22 10:47:04 +02:00 |
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Praveen Raj S
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edaad1cd18
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Update: sentieon version
Sentieon version has been updated to 202112.02.
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2022-04-07 12:36:01 +02:00 |
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James A. Fellows Yates
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44238471cf
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Update eva.config
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2022-03-31 13:12:50 +02:00 |
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James Fellows Yates
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2277b541a3
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Re-add bash bin specification
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2022-03-31 11:06:53 +02:00 |
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James A. Fellows Yates
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8ad4ddac6a
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Merge branch 'master' into fix-eva
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2022-03-29 12:50:54 +02:00 |
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James Fellows Yates
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3d2a612b39
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Remove setting of bash in clusterOotions
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2022-03-29 12:48:37 +02:00 |
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James A. Fellows Yates
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576351219a
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Update eva.config
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2022-03-29 12:47:46 +02:00 |
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James A. Fellows Yates
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9e502025b9
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Merge pull request #358 from aidaanva/master
Update eva.config bigmem.q
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2022-03-28 09:11:18 +02:00 |
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Mahesh Binzer-Panchal
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3a7f7f431e
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Execute sinfo with bash shell
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2022-03-25 13:58:37 +00:00 |
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Aida Andrades Valtueña
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b9da0b4f00
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Update eva.config
Update eva.config to send big memory jobs (>700G) to the bigmem queue
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2022-03-25 09:36:29 +01:00 |
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b97pla
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9a6cdfc21e
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removed process-specific requirements for sarek, request miarka high-mem node
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2022-03-24 14:25:43 +01:00 |
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b97pla
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5466d927f1
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added requirements for uppmax cluster miarka
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2022-03-23 15:29:40 +01:00 |
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James A. Fellows Yates
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962d86d604
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Merge pull request #346 from sagc-bioinformatics/sahmri
Added SAHMRI profile
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2022-03-18 13:01:36 +01:00 |
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Nathan S. Watson-Haigh
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30f710ada4
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Add debug profile
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2022-03-17 13:38:43 +10:30 |
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Praveen Raj S
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1d4f254e43
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Update munin.config
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2022-03-16 14:37:28 +01:00 |
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Praveen Raj S
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9747d5fe15
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Added PileupSummariesForMutect2 in CPU limit list
Add PileupSummariesForMutect2 to the list to run with less threads.
Changed the MaxForks to 12
Tested on an internal sample and it worked!
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2022-03-16 14:36:25 +01:00 |
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Alexander Peltzer
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d510cb254e
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Merge pull request #165 from ewels/fix-show-profiles
Set params.custom_config_base in nextflow.config
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2022-03-15 17:13:24 +01:00 |
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Praveen Raj S
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a844335942
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Update conf/munin.config
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-03-15 16:59:06 +01:00 |
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Praveen Raj S
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cb96c4bd2d
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Update conf/munin.config
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-03-15 16:56:11 +01:00 |
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Praveen Raj S
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13c66f7e98
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Update conf/munin.config
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
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2022-03-15 16:56:03 +01:00 |
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Praveen Raj S
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50c4610345
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Adjusted time and maxforks for Mutect2
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2022-03-15 16:29:19 +01:00 |
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Alexander Peltzer
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3e4fae71a4
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Merge branch 'master' into fix-show-profiles
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2022-03-15 14:52:29 +01:00 |
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James A. Fellows Yates
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1b5037ce5e
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Update eva.config
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2022-03-15 07:49:06 +01:00 |
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James A. Fellows Yates
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1565b2ce63
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Update eva.config
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2022-03-15 07:42:23 +01:00 |
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James A. Fellows Yates
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f725b6c431
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Apply suggestions from code review
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2022-03-15 07:36:34 +01:00 |
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Nathan S. Watson-Haigh
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a0f5ac7445
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Added references subdir to igenomes_base
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2022-03-15 11:41:51 +10:30 |
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James A. Fellows Yates
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4670f8bf0c
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Update eva.config
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2022-03-14 14:56:01 +01:00 |
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James A. Fellows Yates
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a2e2e94333
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Merge pull request #344 from njspix/vai
Add VAI configuration
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2022-03-14 14:36:00 +01:00 |
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Nathan Watson-Haigh
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cc55026751
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Add singularity to PATH
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2022-03-13 07:39:31 +10:30 |
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Nathan Watson-Haigh
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2f0b022571
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Fixed typos
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2022-03-13 00:08:42 +10:30 |
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Nathan Watson-Haigh
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b638694bd0
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Added SAHMRI HPC profile
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2022-03-12 21:17:33 +10:30 |
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Matiss
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6c79c75eec
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Merge pull request #290 from maxozo/master
added leicester profile
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2022-03-11 09:21:09 +00:00 |
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Nathan Spix
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d067f61329
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remove extra spaces
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2022-03-07 15:22:18 -05:00 |
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Spix
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17c77ad516
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update singularity command
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2022-03-07 15:13:26 -05:00 |
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Spix
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c97c48ae5b
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update singularity command
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2022-03-07 15:11:45 -05:00 |
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Spix
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429c7b4fa8
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initial commit
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2022-03-07 15:01:46 -05:00 |
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Alexander Peltzer
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d0d86bfb2a
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Merge pull request #339 from jfy133/rnaseq_mpcdf
Add RNASEQ specific config for MPCDF
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2022-03-07 13:59:08 +01:00 |
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James A. Fellows Yates
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975fca6721
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Apply suggestions from code review
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2022-03-07 13:51:00 +01:00 |
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