Maxime U. Garcia
|
41e00ae8f9
|
Update conf/munin.config
|
2022-02-14 13:11:46 +01:00 |
|
Praveen Raj S
|
90936a5518
|
Added: runOptions to singularity
To bind external mount directories at runtime.
|
2022-02-14 12:45:20 +01:00 |
|
Combiz Khozoie
|
2d434c6ee5
|
Merge pull request #321 from nf-core/combiz-patch-1
Imperial config updates
|
2022-02-11 14:49:30 +00:00 |
|
Maxime U. Garcia
|
4a936a685e
|
Merge pull request #317 from nf-core/praveenraj2018-patch-1
Added genome parameter
|
2022-02-11 15:33:18 +01:00 |
|
Combiz Khozoie
|
a77f718ae2
|
Merge pull request #330 from nf-core/master
Pulling master to branch
|
2022-02-11 14:18:01 +00:00 |
|
Matthias Hörtenhuber
|
0d18767d0c
|
Merge pull request #329 from mashehu/master
update node version for markdownlint
|
2022-02-11 14:32:38 +01:00 |
|
Matthias Hörtenhuber
|
b98ab26662
|
fix markdownlint errors
|
2022-02-11 14:09:16 +01:00 |
|
Matthias Hörtenhuber
|
fcc856c8da
|
update node version for markdownlint
|
2022-02-11 11:03:18 +00:00 |
|
Combiz Khozoie
|
3ce32f50c4
|
Update imperial.config
Moved params configs from internal profile to universal
|
2022-02-11 11:02:40 +00:00 |
|
Combiz Khozoie
|
683564de1b
|
Update main.yml
Removed deprecated imperial medbio from GHA
|
2022-02-11 09:35:18 +00:00 |
|
Combiz Khozoie
|
8937699abe
|
Update README.md
Added imperial docs link
|
2022-02-11 09:33:54 +00:00 |
|
Combiz Khozoie
|
f33bc965d6
|
Update nfcore_custom.config
Removed deprecated medbio config
|
2022-02-11 09:32:50 +00:00 |
|
Combiz Khozoie
|
b99b74b2d3
|
Update imperial.config
Fixed indent
|
2022-02-11 00:26:45 +00:00 |
|
Combiz Khozoie
|
c5e4ac2025
|
Update scflow.config
Removed line corresponding to profile deprecated by change to internal profiles
|
2022-02-11 00:25:44 +00:00 |
|
Combiz Khozoie
|
34d9e7a967
|
Update imperial.md
Updated docs to reflect use of internal profiles
|
2022-02-11 00:08:08 +00:00 |
|
Combiz Khozoie
|
5aa1abda26
|
Delete imperial_mb.md
Deprecated in favour of internal profiles within the single imperial.config
|
2022-02-11 00:07:05 +00:00 |
|
Combiz Khozoie
|
14c7662762
|
Update imperial.md
Updated docs to reflect restructuring for internal profiles
|
2022-02-10 23:49:43 +00:00 |
|
Combiz Khozoie
|
38a05a6531
|
Update imperial.config
Reworked to use internal profiles for the Imperial HPC and the MedBio cluster.
|
2022-02-10 23:46:14 +00:00 |
|
Combiz Khozoie
|
e1d0bf0cd2
|
Delete imperial_mb.config
Separate config for the medbio queue now deprecated in favour of an internal profile within the main imperial.config
|
2022-02-10 23:44:49 +00:00 |
|
Combiz Khozoie
|
fe5474a029
|
Update imperial.config
Multiple process level updates reflecting the latest job sizing guidelines for the Imperial HPC
|
2022-02-10 23:02:47 +00:00 |
|
Harshil Patel
|
8fa6ab9b35
|
Merge pull request #323 from stevin-wilson/patch-1
Added ARTIC v4.1 primer set information
|
2022-02-10 19:17:47 +00:00 |
|
James A. Fellows Yates
|
92424ee2c3
|
Merge pull request #328 from jfy133/eva-update
eager @ EVA walltime whole year
|
2022-02-10 17:23:04 +01:00 |
|
James Fellows Yates
|
88ddc9eee7
|
fffff
|
2022-02-10 11:34:57 +01:00 |
|
James Fellows Yates
|
d7d0f5cecc
|
Change base time
|
2022-02-10 11:32:49 +01:00 |
|
James Fellows Yates
|
dbd78f8075
|
Re add .
|
2022-02-10 11:26:18 +01:00 |
|
James Fellows Yates
|
dd94895f16
|
remove quotes
|
2022-02-10 11:22:45 +01:00 |
|
James Fellows Yates
|
39c2d9b25b
|
Oops
|
2022-02-10 11:19:16 +01:00 |
|
James Fellows Yates
|
c0ee3225ad
|
Add times for 365d
|
2022-02-10 11:02:52 +01:00 |
|
James A. Fellows Yates
|
192839c8be
|
Merge pull request #327 from nf-core/TCLamnidis-patch-2
Removed all time limits
|
2022-02-10 10:22:53 +01:00 |
|
Thiseas C. Lamnidis
|
fa4075c2a0
|
Removed all time limits
|
2022-02-10 10:00:18 +01:00 |
|
James A. Fellows Yates
|
64355b84d2
|
Merge pull request #325 from jfy133/eva-update
Read add empty BAM exit code for qualimap 255 for eager @ EVA
|
2022-02-08 11:28:36 +01:00 |
|
James A. Fellows Yates
|
2b06293f64
|
Read add empty BAM exit code for qualitmap 255
|
2022-02-08 11:15:17 +01:00 |
|
James A. Fellows Yates
|
8d286e3b69
|
Merge pull request #324 from jfy133/eva-update
New attempt of workaround SGE + Java incompatibility for eager @ EVA
|
2022-02-06 20:02:03 +01:00 |
|
James A. Fellows Yates
|
8c5a54ac9f
|
Update conf/pipeline/eager/eva.config
|
2022-02-06 19:37:53 +01:00 |
|
James A. Fellows Yates
|
aa525c6ebf
|
Allow exit code 1 retry for all java processes
|
2022-02-06 09:07:53 +01:00 |
|
Stevin Wilson
|
dbb71161c5
|
Added ARTIC v4.1 primer set information
|
2022-02-04 15:31:51 -05:00 |
|
Patrick Hüther
|
8ff6f302b4
|
Merge pull request #320 from rbpisupati/cbe-singularity
cbe: update config and docs
|
2022-02-04 10:40:16 +01:00 |
|
phue
|
7bf6f284fa
|
cbe: lower the threshold for switching to m queue
|
2022-02-04 10:33:00 +01:00 |
|
phue
|
49810a69b3
|
cbe: add gpu support
just in case.. note that this will need --nv in containerOptions in order to mount cuda libs into the container
|
2022-02-04 10:31:58 +01:00 |
|
phue
|
a6dd3aa0f1
|
cbe: update recommended nextflow version in docs
otherwise, the new anaconda requirements will cause conflicts
|
2022-02-04 10:21:52 +01:00 |
|
phue
|
52b6f7da21
|
update anaconda module
not sure why a binary distribution needs a buildenv at all, but well
|
2022-02-04 10:18:59 +01:00 |
|
phue
|
c3db683535
|
Merge branch 'master' of github.com:nf-core/configs into cbe-singularity
|
2022-02-04 10:14:52 +01:00 |
|
phue
|
b5ab4a8258
|
Revert "changes to cbe module loading"
This reverts commit 7c1c4c7fa4.
|
2022-02-04 10:13:12 +01:00 |
|
James A. Fellows Yates
|
81fe720b00
|
Update eva.config
|
2022-02-04 09:31:33 +01:00 |
|
James A. Fellows Yates
|
86a9042eac
|
Update eva.config
|
2022-02-04 09:25:01 +01:00 |
|
Combiz Khozoie
|
81a273c730
|
Update imperial_mb.config
Dropped support for pqmedbio-large which is not currently available.
|
2022-02-03 18:31:02 +00:00 |
|
Combiz Khozoie
|
2bdf5863d9
|
Update imperial.config
Removed my contact details. Users can request help on the nf-core slack.
|
2022-02-03 18:28:11 +00:00 |
|
Combiz Khozoie
|
731f86e7f1
|
Update imperial_mb.config
Removed my contact details. Users can request help on the nf-core slack.
|
2022-02-03 18:27:49 +00:00 |
|
Combiz Khozoie
|
453080f282
|
Update imperial.config
Removed my contact details. Users can request help on the nf-core slack.
|
2022-02-03 18:26:30 +00:00 |
|
James A. Fellows Yates
|
50aafc6410
|
Update eva.config
|
2022-02-03 17:03:10 +01:00 |
|