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Author SHA1 Message Date
Alexander Peltzer
426017d727
Merge remote-tracking branch 'upstream/master' 2019-11-11 12:21:53 +01:00
Phil Ewels
6790dbd4a3
Merge pull request #82 from arontommi/dev 
documentation on how to fix bianca "Requested node configuration is not available" problem
 2019-11-08 15:07:07 +01:00
Phil Ewels
5e7d13df89
Update uppmax.md 2019-11-08 10:59:34 +01:00
Alexander Peltzer
16a0ba9fd5
Update cfc.config 2019-11-08 10:06:23 +01:00
arontommi
99f4d9b9bd documentation on how to fix bianca cluster configuration problem 2019-11-06 13:10:09 +01:00
James A. Fellows Yates
ebbf884ac5
Merge pull request #81 from maxibor/master 
Update shh doc
 2019-10-28 20:02:27 +01:00
maxibor
47a7d57db4 update shh doc 2019-10-28 16:09:00 +01:00
Alexander Peltzer
84178c2550
Merge pull request #80 from phue/remove_mendel 
MENDEL is no more
 2019-10-28 14:45:18 +01:00
phue
5a9dbe5d7c MENDEL is no more 
the cluster is no longer operational, was replaced by CBE
 2019-10-28 14:11:34 +01:00
Alexander Peltzer
eb6d23254d
Fix binac resources 2019-10-28 13:22:12 +01:00
Alexander Peltzer
e557ced184
Update max memory 2019-10-28 13:21:41 +01:00
Alexander Peltzer
06bd1ab79e
Merge branch 'master' into master 2019-10-28 13:21:08 +01:00
Alexander Peltzer
41e607e7f9
Fix expression 2019-10-28 13:17:39 +01:00
Alexander Peltzer
494aa8b53e
Mini fix 2019-10-28 13:15:54 +01:00
Alexander Peltzer
9299355890
Merge pull request #78 from nf-core/revert-43-master 
Revert "BINAC SMP / Short / Long Updates"
 2019-10-28 13:12:42 +01:00
Alexander Peltzer
5348b8c609
Revert "BINAC SMP / Short / Long Updates" 2019-10-28 13:12:31 +01:00
Alexander Peltzer
7951805fbf
Merge pull request #43 from apeltzer/master 
BINAC SMP / Short / Long Updates
 2019-10-28 13:09:56 +01:00
Alexander Peltzer
83fcc0b2ba
Adjust max memory 2019-10-28 13:09:30 +01:00
Harshil Patel
b23e9d5a9f
Merge pull request #77 from phue/igenomesIgnore_deprecated 
deprecate igenomesIgnore in favor of igenomes_ignore
 2019-10-28 11:05:48 +00:00
phue
18ed48f398 deprecate igenomesIgnore in favor of igenomes_ignore 
keep both for now until all the pipelines have been synced
 2019-10-28 11:38:24 +01:00
Patrick Hüther
8e5cc7838c
Merge pull request #76 from phue/cbe_dynamic 
cbe: dynamic qos logic
 2019-10-28 11:23:23 +01:00
phue
123f199b68 cbe: dynamic qos logic 2019-10-27 20:44:08 +01:00
Alexander Peltzer
5ec19e3abb
Binac SMP / Long / Short Queue Additions 2019-10-27 13:28:00 +01:00
Alexander Peltzer
b5b2dd817f
Merge all 2019-10-27 13:24:45 +01:00
James A. Fellows Yates
28cd84d44a
Merge pull request #74 from maxibor/master 
Resource based queue choice for SHH config
 2019-10-25 20:17:47 +02:00
Maxime Borry
834601f05b Merge branch 'master' of https://github.com/nf-core/configs 2019-10-25 15:52:23 +02:00
Maxime Borry
7a2fe44b43 resource based queuing 2019-10-25 15:50:49 +02:00
maxibor
5e54912ada add queue choice 2019-10-25 14:08:02 +02:00
Alexander Peltzer
2b99228ce8
Merge pull request #73 from abretaud/genouest 
Add Genouest cluster
 2019-10-17 13:18:04 +02:00
Anthony Bretaudeau
883a761651 add link 2019-10-16 18:45:26 +02:00
Anthony Bretaudeau
1f2786c78f add genouest cluster 2019-10-16 18:15:04 +02:00
Patrick Hüther
b9e4ba71d0
Merge pull request #72 from phue/cbe-singularity 
cbe: update singularity version
 2019-10-10 21:27:21 +02:00
phue
9b3fda36f6 update singularity version 
singularity/3.1.0 is not available anymore
 2019-10-10 21:22:19 +02:00
Alexander Peltzer
efa402010a
Merge pull request #70 from sven1103/master 
Sends weblog messages over HTTPS
 2019-10-10 13:30:21 +02:00
Sven Fillinger
dc3faf8a5f Sends weblog messages over HTTPS 2019-10-10 12:56:39 +02:00
Alexander Peltzer
45e331f362
Merge pull request #69 from sven1103/master 
Refactors weblog url for cfc and binac
 2019-10-08 15:15:50 +02:00
Sven Fillinger
855da0cee3 Refactors weblog url 2019-10-08 14:19:42 +02:00
Alexander Peltzer
ed8c9d9e7a
Update cfc.config 2019-10-08 13:20:58 +02:00
Alexander Peltzer
1e54d9510d
Update cfc.config 2019-10-08 13:15:49 +02:00
Alexander Peltzer
865909ac54
Update cfc.config 2019-10-08 13:14:21 +02:00
Alexander Peltzer
5fae33669d
Update cfc.config 
Try this out 👍
 2019-10-08 13:07:28 +02:00
Alexander Peltzer
659fe3cadc
Merge pull request #68 from nf-core/CFC-Singularity-Cache 
Add Singularity Cache Directory
 2019-10-08 12:51:08 +02:00
Alexander Peltzer
4555dd7d36
Update conf/cfc.config 2019-10-08 12:51:01 +02:00
Alexander Peltzer
abb6780081
Add Singularity Cache Directory 2019-10-08 12:48:24 +02:00
Alexander Peltzer
dba5a72817
Merge pull request #67 from phue/cbe_profile 
add cbe config
 2019-09-23 14:51:17 +02:00
phue
fb60856e40 point travis to local clone 
Previously travis tests could only succeed if the config was already present in the master branch, but for newly added
configs it would always fail.

This commit sets custom_config_base to the local clone of the PR branch on the Travis VM where the file is present.
 2019-09-23 13:57:58 +02:00
phue
d7e891a576 Revert "point travis to local clone" 
This reverts commit 014111b925.
 2019-09-23 13:55:43 +02:00
phue
014111b925 point travis to local clone 
Previously travis tests could only succeed if the config was already present in the master branch, but for newly added
configs it would always fail.

This commit sets custom_config_base to the local clone of the PR branch on the Travis VM where the file is present.
 2019-09-23 13:42:11 +02:00
phue
5e257e7e9a add cbe profile 2019-09-22 16:45:09 +02:00
Alexander Peltzer
836da97efd
Merge pull request #66 from marchoeppner/ccga-config 
Updating CCGA configs - adding cache dir and mount points
 2019-09-03 17:25:34 +02:00