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Author SHA1 Message Date
Gwenna Breton
4538e8aa36
Update medair.config 
- added path to singularity image for Sentieon
- harmonized alignment
 2022-07-07 13:41:42 +02:00
Gwenna Breton
746db14d47
Update medair.md 
- updated text about storing singularity images
- updated text about using profiles
 2022-07-07 11:42:46 +02:00
qlr900
d19d6c0ae0 update wording 2022-07-06 16:19:16 +02:00
qlr900
d2b6b07de8 remove comments for mnaseseq 2022-07-06 14:18:31 +02:00
Gwennid
b6e2d03a02 Added Singularity cache dir 2022-07-06 13:59:35 +02:00
qlr900
4f98876429 add export to NXF_SINGULARITY_CACHEDIR 2022-07-06 13:35:10 +02:00
qlr900
6939c6f003 lower queueSize to 5 2022-07-06 13:34:18 +02:00
qlr900
f45b8645f6 update wording 2022-07-06 13:05:13 +02:00
qlr900
8a781b6bb2 modify alternative module load 2022-07-06 12:54:07 +02:00
qlr900
7ac08a1015 add alternative module load 2022-07-06 12:42:14 +02:00
qlr900
49e756d1bc fix typos 2022-07-06 12:39:55 +02:00
Gwennid
96fd2bf217 Fixed formatting 2022-07-06 11:42:05 +02:00
Gwenna Breton
1d13dd9fbc
Changed where cgg-it is mentioned 2022-07-06 11:24:03 +02:00
Gwenna Breton
235097e58e
Addressed review comments 
- removed mention of iGenomes
- clarified whom to contact for support
 2022-07-06 11:20:59 +02:00
Gwenna Breton
1d7a34b11f
Removed comment about internal doc 2022-07-06 11:17:58 +02:00
Gwenna Breton
b202ad70ac
Removed mention of specific module versions 2022-07-06 11:16:38 +02:00
qlr900
56026c5ac4 remove beforeScript 2022-07-06 09:52:51 +02:00
qlr900
7d59eabd91 simplify guideline 2022-07-06 09:52:06 +02:00
qlr900
941a34406a update ku_sund_dangpu.md 2022-07-05 12:06:19 +02:00
qlr900
8ba35f721c add ku_sund_dangpu.md 2022-07-05 12:05:10 +02:00
qlr900
65d7080921 add conf/ku_sund_dangpu.config 2022-07-05 11:17:49 +02:00
James A. Fellows Yates
08435ca300
Merge pull request #382 from jfy133/eva-java-correction 
EAGER @ EVA Further Java workarounds
 2022-07-04 13:42:13 +02:00
James A. Fellows Yates
a141ff626b
Merge branch 'master' into eva-java-correction 2022-07-04 13:35:50 +02:00
Gwenna Breton
b3a6e199ca
Merge branch 'nf-core:master' into medair 2022-07-01 17:02:56 +02:00
Maxime U. Garcia
49e779e337
Merge pull request #394 from nvnieuwk/vsc-ugent-fix 
Vsc ugent fix for job-intensive pipelines
 2022-07-01 16:26:41 +02:00
Nicolas Vannieuwkerke
8a74c517d4 Merge branch 'vsc-ugent-fix' of github.com:nvnieuwk/configs into vsc-ugent-fix 2022-07-01 16:16:22 +02:00
Nicolas Vannieuwkerke
1e34595280 removed queue size limit 2022-07-01 16:16:18 +02:00
nvnieuwk
5ff845cde7
Merge branch 'master' into vsc-ugent-fix 2022-07-01 16:10:45 +02:00
Nicolas Vannieuwkerke
fa949a069e added queuesize 2022-07-01 16:01:19 +02:00
Nicolas Vannieuwkerke
abfa3f47f4 lowered the job submit rate of vsc_ugent 2022-07-01 15:55:44 +02:00
Gwenna Breton
84174043e4
Added details for nf-core pipelines download 2022-06-30 16:41:50 +02:00
Gwenna Breton
2398110ea5
Added info on dowloading pipelines 2022-06-30 14:24:17 +02:00
Gwenna Breton
22f73b06f9 Updated info about the different profiles 2022-06-30 12:00:05 +02:00
Gwenna Breton
77dba3256a Add profile name to test scope 2022-06-30 11:53:02 +02:00
Gwenna Breton
abccece8a3 Added medair config file to the list 2022-06-30 11:49:47 +02:00
Gwenna Breton
77017e877a Added medair configuration docs to the list 2022-06-30 11:48:34 +02:00
Gwenna Breton
f718025e79 Added doc file for medair 2022-06-30 11:43:04 +02:00
Gwenna Breton
bb35d8e5d1 Added conf file for medair 2022-06-30 11:42:36 +02:00
Maxime U. Garcia
23669d2df6
Merge pull request #393 from Sage-Bionetworks-Workflows/bgrande/sage-sarek-config 
Include `check_max()` definition for Sage configuration
 2022-06-23 21:47:17 +02:00
Bruno Grande
6f0d9e6c43 Complete check_max() move to global config 2022-06-23 10:10:28 -07:00
Bruno Grande
a19d79f6ff Move check_max() to global config 2022-06-23 09:44:16 -07:00
Bruno Grande
1c7230cb08 Add Sage-specific Sarek config 2022-06-23 09:15:42 -07:00
Phil Ewels
1730751d97
Merge pull request #389 from Sage-Bionetworks-Workflows/bgrande/sage-config 
[WIP] Add custom configuration for Sage Bionetworks
 2022-06-23 11:34:40 +02:00
Bruno Grande
37121faf4a Fix typoe with label name 2022-06-22 14:37:43 -07:00
Bruno Grande
ecd898584d Handle Sarek-specific max labels 2022-06-22 13:54:13 -07:00
Bruno Grande
c7093dee13 Reduce max_memory to fit on an instance 2022-06-16 12:37:32 -07:00
James A. Fellows Yates
51d057564f
Fix python related seg faults mag@eva 2022-06-15 15:40:42 +02:00
James Fellows Yates
ba8bffbdfd Use env scope instead of beforescript for mag@eva 2022-06-15 15:39:36 +02:00
James Fellows Yates
d12d98fb2e Merge branches 'master' and 'eva-java-correction' of github.com:jfy133/nf-core-configs into master 2022-06-15 15:38:35 +02:00
James Fellows Yates
acabcbd9e8 Use _JAVA_OPTIONS instead 2022-06-15 15:27:40 +02:00