Emil
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8453f6b41a
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Moves qualimap arg to pipeline-specific config
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2022-05-30 12:58:12 +02:00 |
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Emil
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29fa08c434
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Adds _JAVA_OPTIONS to singularity whitelist
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2022-05-30 11:07:24 +02:00 |
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Emil
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19497a4183
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Makes qualimap fix work for most memory amounts
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2022-05-30 11:06:48 +02:00 |
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Åshild J. Vågene
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bb25c77e7c
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Update holo_globe
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2022-05-20 17:01:30 +02:00 |
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Åshild J. Vågene
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d3e5c79fb4
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Create holo_globe
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2022-05-20 15:44:20 +02:00 |
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Phil Ewels
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123706519e
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Merge pull request #377 from nvnieuwk/vsc_ugent
Typo in VSC UGent markdown
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2022-05-20 10:55:39 +02:00 |
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nvnieuwk
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15e03bcc7b
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Merge branch 'nf-core:master' into vsc_ugent
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2022-05-20 10:36:51 +02:00 |
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Nicolas Vannieuwkerke
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867dcabd97
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Fix type in VSC UGent
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2022-05-20 10:36:07 +02:00 |
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nvnieuwk
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817f1a4aa7
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Merge pull request #376 from nvnieuwk/vsc_ugent
Added the VSC UGent profile
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2022-05-20 10:29:50 +02:00 |
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Nicolas Vannieuwkerke
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8432e4d1dc
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typo
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2022-05-20 09:49:42 +02:00 |
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Nicolas Vannieuwkerke
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fa39478a2d
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prettier
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2022-05-20 09:49:04 +02:00 |
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Nicolas Vannieuwkerke
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c2b26a734d
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automated the internal cache dir location for singularity
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2022-05-20 09:48:19 +02:00 |
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nvnieuwk
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b2f7538b33
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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-20 09:42:31 +02:00 |
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nvnieuwk
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a3583262c2
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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-20 09:41:02 +02:00 |
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nvnieuwk
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dba85e53fa
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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-20 09:40:55 +02:00 |
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Nicolas Vannieuwkerke
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d12fdfb40a
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added to the README
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2022-05-20 09:37:55 +02:00 |
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Nicolas Vannieuwkerke
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6fa8cd8a6d
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added the profile to the test yaml
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2022-05-20 09:33:43 +02:00 |
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Nicolas Vannieuwkerke
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a2d77df2ee
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added default scratch location to markdown file
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2022-05-20 09:32:14 +02:00 |
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Nicolas Vannieuwkerke
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8621db3440
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added the profile to nfcore_custom
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2022-05-20 09:21:46 +02:00 |
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Nicolas Vannieuwkerke
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2f74c91145
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prettier
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2022-05-20 09:18:33 +02:00 |
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Nicolas Vannieuwkerke
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cc86e6b270
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Added the VSC UGent profile
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2022-05-20 09:12:18 +02:00 |
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Sarah Guinchard
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be9711731a
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Merge pull request #375 from nf-core/ifb_core-config-update
Ifb core config update
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2022-05-13 14:45:44 +02:00 |
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Sofia Stamouli
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44402cf28e
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Merge pull request #373 from genomic-medicine-sweden/taxprofiler_hasta
Add hasta config for taxprofiler
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2022-05-12 15:23:26 +02:00 |
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sofstam
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ca4cdcffee
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Fix typo
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2022-05-12 15:07:30 +02:00 |
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sofstam
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b1deb0abce
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Update README.md
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2022-05-12 14:56:52 +02:00 |
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Sarah Guinchard
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3538f8511a
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removed comment
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2022-05-12 11:02:42 +02:00 |
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Sarah Guinchard
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84457cc655
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Update documentation
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2022-05-12 11:01:36 +02:00 |
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sofstam
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54b3cda34d
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Add review suggestion
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2022-05-12 11:00:26 +02:00 |
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Sarah Guinchard
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6bb7c1a422
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Update config file with queue & correct ressources
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2022-05-12 10:55:00 +02:00 |
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sofstam
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c59149d64c
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Update docs for hasta config
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2022-05-12 10:47:03 +02:00 |
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James A. Fellows Yates
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4a50fd40e7
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Merge pull request #374 from jfy133/taxprofiler
Add taxprofiler pipeline sepcific config for EVA
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2022-05-12 10:14:41 +02:00 |
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James Fellows Yates
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e1f780d976
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Add taxprofiler for eVA
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2022-05-12 07:54:17 +01:00 |
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sofstam
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5bc6ed90bd
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Add hasta config for taxprofiler
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2022-05-11 11:13:31 +02:00 |
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Thiseas C. Lamnidis
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65d07a3ead
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Merge pull request #372 from nf-core/TCLamnidis-patch-1
Update eva.config
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2022-05-06 15:53:03 +02:00 |
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Thiseas C. Lamnidis
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d09f5fc116
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Update eva.config
eigenstrat_snp_coverage also loads pandas
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2022-05-06 15:12:04 +02:00 |
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James A. Fellows Yates
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8fbfcfe256
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Merge pull request #371 from jfy133/master
Rename custom log file for EVA
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2022-05-06 14:02:03 +02:00 |
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James A. Fellows Yates
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95d18270e8
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Update eva.config
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2022-05-06 13:57:11 +02:00 |
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Emil
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e938f3606f
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Removes the new SGE clusterOptions for now
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2022-05-05 14:09:45 +02:00 |
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Harshil Patel
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15c938d05b
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Merge pull request #370 from drpatelh/google
Update retry strategy for preemptible instances on GCP
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2022-05-05 11:22:36 +01:00 |
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Harshil Patel
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20c826fd50
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Update retry strategy for preemptible instances on GCP
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2022-05-05 11:10:05 +01:00 |
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Emil
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8b9744723c
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Fixes hasta java memory issues
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2022-05-04 14:13:24 +02:00 |
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Thiseas C. Lamnidis
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a543a3ebc6
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Merge pull request #369 from TCLamnidis/master
missing bracket in eager eva.config
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2022-05-04 13:14:10 +02:00 |
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Thiseas C. Lamnidis
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209601f782
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missing bracket
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2022-05-04 13:08:13 +02:00 |
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James A. Fellows Yates
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c85342a9c9
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Merge pull request #368 from TCLamnidis/master
Update eva.config
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2022-05-04 12:32:04 +02:00 |
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Thiseas C. Lamnidis
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a42c4344ad
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Exclude bionode 06 for software versions
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2022-05-03 18:30:42 +02:00 |
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Thiseas C. Lamnidis
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08edd19d67
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Merge pull request #1 from TCLamnidis/TCLamnidis-patch-1
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2022-05-03 17:46:54 +02:00 |
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Thiseas C. Lamnidis
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79e227aa4e
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Update eva.config
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2022-05-03 16:42:21 +02:00 |
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Thiseas C. Lamnidis
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085726d081
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Update eva.config
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2022-05-03 16:36:05 +02:00 |
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Thiseas C. Lamnidis
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4592969613
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memory for get_software_versions in MB.
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2022-05-03 16:30:04 +02:00 |
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Thiseas C. Lamnidis
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79ad571319
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Update eva.config
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2022-05-03 16:25:48 +02:00 |
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