Maxime Garcia
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14864bb80b
|
Update conf/uppmax.config
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2019-12-06 10:31:56 +01:00 |
|
Alexander Peltzer
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da547b4ce3
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Merge pull request #102 from phue/cbe_singularity
cbe: load singularity/3.4.1
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2019-12-06 10:21:55 +01:00 |
|
James A. Fellows Yates
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0033b74e4e
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Update shh.config
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2019-12-05 18:08:39 +01:00 |
|
James A. Fellows Yates
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dc0f1dfb40
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Update shh.config
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2019-12-05 17:58:49 +01:00 |
|
James A. Fellows Yates
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b1a8b45aa0
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Maybe typo?
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2019-12-05 17:52:53 +01:00 |
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jfy133
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731372dac2
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Added SHH specific EAGER configuration
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2019-12-05 17:01:10 +01:00 |
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phue
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381c60e7b7
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cbe: load singularity/3.4.1
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2019-12-05 16:06:32 +01:00 |
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MaxUlysse
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a63ec24626
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Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX
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2019-12-05 15:18:04 +01:00 |
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MaxUlysse
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99afe86ea9
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update docs
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2019-12-05 15:18:01 +01:00 |
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MaxUlysse
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f41d325873
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automatic configs work on all nodes
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2019-12-05 15:07:59 +01:00 |
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Maxime Garcia
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78826c9d4e
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Merge branch 'master' into UPPMAX
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2019-12-05 12:52:34 +01:00 |
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Alexander Peltzer
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9cdb915efb
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Merge pull request #101 from jfy133/master
Condensing SHH profile(s) with sub-profiles
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2019-12-05 12:51:31 +01:00 |
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MaxUlysse
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cf6e00d9f5
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better match for hostname
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2019-12-05 12:46:32 +01:00 |
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MaxUlysse
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20e451be3b
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actually define hostname
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2019-12-05 12:45:30 +01:00 |
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MaxUlysse
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0211b33a55
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trying automatic configuration based on hostname
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2019-12-05 12:41:18 +01:00 |
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James A. Fellows Yates
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842642a2bb
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Apply suggestions from code review
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2019-12-05 12:23:36 +01:00 |
|
James A. Fellows Yates
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678a3841b6
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Update conf/shh.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
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2019-12-05 12:23:06 +01:00 |
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jfy133
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54dafbcfa3
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Condensing SHH profiles following https://github.com/nf-core/configs/pull/100
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2019-12-05 12:09:11 +01:00 |
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MaxUlysse
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cdbdbee0eb
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replace -profile uppmax_devel by -profile uppmax,devel
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2019-12-05 11:49:44 +01:00 |
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Sabrina Krakau
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2eed8f7429
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Lowered max. memory for cfc
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2019-11-28 12:49:02 +01:00 |
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Olga Botvinnik
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f57e00e87d
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Set awsqueue parameter properly
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2019-11-27 15:57:09 -08:00 |
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Alexander Peltzer
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4f77eae5cf
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Mini adjustment for highmem queue on denbi
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2019-11-27 14:23:01 +01:00 |
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Maxime Garcia
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2669401a72
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Merge branch 'master' into sarek
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2019-11-27 13:27:43 +01:00 |
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Alexander Peltzer
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5e0e3e0567
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Merge pull request #96 from jfy133/master
Splitting SHH config to one per cluster
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2019-11-27 12:06:54 +01:00 |
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Alexander Peltzer
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54719c4761
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Merge pull request #95 from ggabernet/master
Update max memory for cfc profile
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2019-11-26 21:21:07 +01:00 |
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James A. Fellows Yates
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c725c71e4d
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Merge branch 'master' into master
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2019-11-26 20:34:42 +01:00 |
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jfy133
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6f40c13473
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Split shh config for each cluster
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2019-11-26 20:20:17 +01:00 |
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phue
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88b5be3060
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Merge branch 'master' of https://github.com/nf-core/configs into cbe_iGenomes
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2019-11-26 18:08:43 +01:00 |
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ggabernet
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834f4b4179
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updated memory cfc config
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2019-11-26 17:30:41 +01:00 |
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Alexander Peltzer
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ee99d7f2d4
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Merge pull request #94 from apeltzer/master
Mini Cosmetic Fixes for README
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2019-11-26 16:24:30 +01:00 |
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Alexander Peltzer
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b756ce54a4
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Add genotoul fix
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2019-11-26 16:09:08 +01:00 |
|
Alexander Peltzer
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81739a3907
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Merge pull request #93 from jfy133/master
Updated max resources for SHH SDAG
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2019-11-26 15:56:39 +01:00 |
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James A. Fellows Yates
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c3d27099ca
|
Updated authors
|
2019-11-26 15:26:05 +01:00 |
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James A. Fellows Yates
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ca6ddcadb0
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Matching max CPUs to SDAG (supercruncher8)
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2019-11-26 15:25:35 +01:00 |
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MaxUlysse
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6f638b7ad4
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Merge branch 'sarek' of github.com:MaxUlysse/nf-core_configs into sarek
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2019-11-26 15:22:02 +01:00 |
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MaxUlysse
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25f3bd68f8
|
container = null
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2019-11-26 15:21:53 +01:00 |
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Alexander Peltzer
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5c39c1ed1a
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Merge branch 'master' into master
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2019-11-26 15:07:31 +01:00 |
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Noirot Céline
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611c318569
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Update conf/genotoul.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
|
2019-11-26 14:50:05 +01:00 |
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Noirot Céline
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dd4ff452da
|
Update conf/genotoul.config
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
|
2019-11-26 14:49:47 +01:00 |
|
Alexander Peltzer
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37c6714cc7
|
Nice prince
|
2019-11-26 14:29:52 +01:00 |
|
phue
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bdf4a829b8
|
roll out iGenomes on cbe
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2019-11-26 14:22:16 +01:00 |
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Alexander Peltzer
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23f9fd2d73
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Merge branch 'master' into master
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2019-11-26 14:20:36 +01:00 |
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Maxime Garcia
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68c709432f
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Apply suggestions from code review
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
|
2019-11-26 14:17:32 +01:00 |
|
Alexander Peltzer
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d592c79954
|
Merge branch 'master' into master
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2019-11-26 13:59:06 +01:00 |
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MaxUlysse
|
ebdfc2a768
|
fix container/module collision
|
2019-11-26 11:59:00 +01:00 |
|
Maxime Garcia
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880551d246
|
Apply suggestions from code review
|
2019-11-26 11:58:13 +01:00 |
|
Maxime Garcia
|
f6c2e4c65f
|
Update docs/pipeline/sarek/munin.md
Update conf/pipeline/sarek/munin.config
testing out module and containers collision
|
2019-11-26 11:57:51 +01:00 |
|
Maxime Garcia
|
9d23f7a266
|
Update conf/pipeline/sarek/munin.config
|
2019-11-26 11:56:02 +01:00 |
|
MaxUlysse
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45cec1ac2f
|
Add specific sarek config base, munin specific sarek config and docs
rename file
improve configs
remove unnecessary params
|
2019-11-26 11:52:53 +01:00 |
|
MaxUlysse
|
028008c1d0
|
improve syntax
|
2019-11-26 11:48:29 +01:00 |
|
Maxime Garcia
|
93d5156c7d
|
Update conf/munin.config
|
2019-11-26 11:48:29 +01:00 |
|
MaxUlysse
|
e98f74e47b
|
actually belong to nf-core/configs/munin
|
2019-11-26 11:48:29 +01:00 |
|
MaxUlysse
|
edde1ee64d
|
fix container/module collision
|
2019-11-26 11:48:29 +01:00 |
|
Maxime Garcia
|
9a57e487d7
|
Apply suggestions from code review
|
2019-11-26 11:48:29 +01:00 |
|
Maxime Garcia
|
b029ccaa59
|
Update docs/pipeline/sarek/munin.md
Update conf/pipeline/sarek/munin.config
|
2019-11-26 11:48:11 +01:00 |
|
Maxime Garcia
|
73047968cf
|
Update conf/pipeline/sarek/munin.config
|
2019-11-26 11:25:29 +01:00 |
|
MaxUlysse
|
cd1d0b5f8f
|
Add specific sarek config base, munin specific sarek config and docs
rename file
improve configs
remove unnecessary params
|
2019-11-26 11:25:29 +01:00 |
|
Maxime Garcia
|
1ce8ce0c55
|
Apply suggestions from code review
|
2019-11-26 11:00:24 +01:00 |
|
MaxUlysse
|
75c1fd5cd9
|
fix tests
|
2019-11-26 10:43:23 +01:00 |
|
Alexander Peltzer
|
b60fa8109e
|
Shift some configs to params scope
|
2019-11-26 00:57:10 +01:00 |
|
Noirot Céline
|
ed4436c1a6
|
Merge branch 'master' into master
|
2019-11-25 16:24:12 +01:00 |
|
noirot
|
db51c49b2f
|
Add genotoul config
|
2019-11-25 14:54:25 +01:00 |
|
MaxUlysse
|
08a6b74825
|
add new profile to be shared: awsbatch
|
2019-11-19 14:16:06 +01:00 |
|
Alexander Peltzer
|
bc9ecf50ac
|
Update binac.config
Upgrade to 3.4.2
|
2019-11-11 13:56:17 +01:00 |
|
Alexander Peltzer
|
e66ca6f670
|
Merge pull request #83 from nf-core/cfc_new_singularity_test
Update Singularity to 3.4.2 on CFC
|
2019-11-11 13:55:01 +01:00 |
|
Alexander Peltzer
|
d2603a134e
|
Add in denbi cloud configs
|
2019-11-11 12:26:19 +01:00 |
|
Alexander Peltzer
|
426017d727
|
Merge remote-tracking branch 'upstream/master'
|
2019-11-11 12:21:53 +01:00 |
|
Alexander Peltzer
|
16a0ba9fd5
|
Update cfc.config
|
2019-11-08 10:06:23 +01:00 |
|
phue
|
5a9dbe5d7c
|
MENDEL is no more
the cluster is no longer operational, was replaced by CBE
|
2019-10-28 14:11:34 +01:00 |
|
Alexander Peltzer
|
eb6d23254d
|
Fix binac resources
|
2019-10-28 13:22:12 +01:00 |
|
Alexander Peltzer
|
e557ced184
|
Update max memory
|
2019-10-28 13:21:41 +01:00 |
|
Alexander Peltzer
|
06bd1ab79e
|
Merge branch 'master' into master
|
2019-10-28 13:21:08 +01:00 |
|
Alexander Peltzer
|
41e607e7f9
|
Fix expression
|
2019-10-28 13:17:39 +01:00 |
|
Alexander Peltzer
|
494aa8b53e
|
Mini fix
|
2019-10-28 13:15:54 +01:00 |
|
Alexander Peltzer
|
5348b8c609
|
Revert "BINAC SMP / Short / Long Updates"
|
2019-10-28 13:12:31 +01:00 |
|
Alexander Peltzer
|
7951805fbf
|
Merge pull request #43 from apeltzer/master
BINAC SMP / Short / Long Updates
|
2019-10-28 13:09:56 +01:00 |
|
Alexander Peltzer
|
83fcc0b2ba
|
Adjust max memory
|
2019-10-28 13:09:30 +01:00 |
|
phue
|
18ed48f398
|
deprecate igenomesIgnore in favor of igenomes_ignore
keep both for now until all the pipelines have been synced
|
2019-10-28 11:38:24 +01:00 |
|
phue
|
123f199b68
|
cbe: dynamic qos logic
|
2019-10-27 20:44:08 +01:00 |
|
Alexander Peltzer
|
5ec19e3abb
|
Binac SMP / Long / Short Queue Additions
|
2019-10-27 13:28:00 +01:00 |
|
Maxime Borry
|
834601f05b
|
Merge branch 'master' of https://github.com/nf-core/configs
|
2019-10-25 15:52:23 +02:00 |
|
Maxime Borry
|
7a2fe44b43
|
resource based queuing
|
2019-10-25 15:50:49 +02:00 |
|
maxibor
|
5e54912ada
|
add queue choice
|
2019-10-25 14:08:02 +02:00 |
|
Anthony Bretaudeau
|
1f2786c78f
|
add genouest cluster
|
2019-10-16 18:15:04 +02:00 |
|
phue
|
9b3fda36f6
|
update singularity version
singularity/3.1.0 is not available anymore
|
2019-10-10 21:22:19 +02:00 |
|
Sven Fillinger
|
dc3faf8a5f
|
Sends weblog messages over HTTPS
|
2019-10-10 12:56:39 +02:00 |
|
Sven Fillinger
|
855da0cee3
|
Refactors weblog url
|
2019-10-08 14:19:42 +02:00 |
|
Alexander Peltzer
|
ed8c9d9e7a
|
Update cfc.config
|
2019-10-08 13:20:58 +02:00 |
|
Alexander Peltzer
|
1e54d9510d
|
Update cfc.config
|
2019-10-08 13:15:49 +02:00 |
|
Alexander Peltzer
|
865909ac54
|
Update cfc.config
|
2019-10-08 13:14:21 +02:00 |
|
Alexander Peltzer
|
5fae33669d
|
Update cfc.config
Try this out 👍
|
2019-10-08 13:07:28 +02:00 |
|
Alexander Peltzer
|
4555dd7d36
|
Update conf/cfc.config
|
2019-10-08 12:51:01 +02:00 |
|
Alexander Peltzer
|
abb6780081
|
Add Singularity Cache Directory
|
2019-10-08 12:48:24 +02:00 |
|
phue
|
5e257e7e9a
|
add cbe profile
|
2019-09-22 16:45:09 +02:00 |
|
Alexander Peltzer
|
836da97efd
|
Merge pull request #66 from marchoeppner/ccga-config
Updating CCGA configs - adding cache dir and mount points
|
2019-09-03 17:25:34 +02:00 |
|
marchoeppner
|
3b638e9ccd
|
Fixing typo in ccga_dx config
|
2019-09-03 15:37:15 +02:00 |
|
Szilveszter Juhos
|
c3c0d088dd
|
typo
|
2019-08-16 11:13:32 +02:00 |
|
marchoeppner
|
486cdfce5f
|
Updating CCGA configs - adding cache dir and mount points
|
2019-08-07 13:19:16 +02:00 |
|
MaxUlysse
|
4183090379
|
fix: reduce cpu and mem usage
|
2019-08-07 12:26:51 +02:00 |
|
MaxUlysse
|
23dd3dd098
|
Merge branch 'master' of github.com:MaxUlysse/nf-core_configs
|
2019-08-07 11:56:52 +02:00 |
|