Edmund Miller
c42bb07981
fix: Singularity => singularity
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For some reason ours are lowercase
2020-03-10 09:55:17 -05:00
Edmund Miller
b79f0f0a21
ci: add utd_gaymede to main
2020-03-09 20:11:52 -05:00
Edmund Miller
1c62395332
docs(utd_ganymede): add initial documentation
2020-03-09 20:07:46 -05:00
Edmund Miller
123c44c56d
feat: add initial ganymede config
2020-03-09 16:18:41 -05:00
James A. Fellows Yates
52214cc22d
Merge pull request #134 from marcel-keller/ebc
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adding Estonian Biocentre cluster profile
2020-03-09 16:09:27 +01:00
marcel-keller
dcb478c904
Update ebc.md
2020-03-09 17:07:03 +02:00
marcel-keller
8e3803e4d7
Update ebc.config
2020-03-09 16:57:45 +02:00
marcel-keller
c00bbe982b
Update ebc.config
2020-03-09 16:51:38 +02:00
marcel-keller
3b57519500
Update ebc.config
2020-03-09 16:48:50 +02:00
marcel-keller
edc6a6aa87
Update nfcore_custom.config
2020-03-09 16:35:45 +02:00
marcel-keller
88cfe11187
Update ebc.md
2020-03-09 16:32:14 +02:00
marcel-keller
f48a4cbfb8
Update main.yml
2020-03-09 16:25:19 +02:00
marcel-keller
418f4b52b6
Create ebc.md
2020-03-09 16:23:16 +02:00
Alexander Peltzer
b8d020b78c
Update cfc.md
2020-03-09 15:12:49 +01:00
marcel-keller
de914e56ee
Create ebc.config
2020-03-09 16:08:01 +02:00
Alexander Peltzer
55fa7e4e00
Merge pull request #132 from nf-core/evanfloden-patch-1
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Update google.md
2020-03-09 15:07:38 +01:00
Evan Floden
6141e008a3
Update google.md
2020-03-09 14:44:58 +01:00
Evan Floden
362c737073
Merge pull request #131 from nf-core/merge-gogole
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Merge Evans Google additions
2020-03-09 13:56:24 +01:00
Alexander Peltzer
ebae81ceb3
Update main.yml
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Drop CCGA, as it was removed in an intermediate merge.
2020-03-06 17:18:03 +01:00
Alexander Peltzer
9fa08cde5c
Merge pull request #127 from seqeralabs/master
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Add Google Cloud Life Sciences config
2020-03-06 17:17:05 +01:00
Evan Floden
d8ad376f71
Merge branch 'master' into master
2020-03-06 10:29:50 +00:00
Evan Floden
f5364e45e7
Update google.md or markdown linting
2020-03-06 11:27:44 +01:00
Alexander Peltzer
59a787b179
Merge pull request #122 from marchoeppner/ccga-config
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Removing old CCGA profile from docs and linting
2020-03-06 11:17:08 +01:00
Alexander Peltzer
3ae3842e61
Merge pull request #130 from nf-core/mseybold-patch-3
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Update RADME.md
2020-03-06 11:16:00 +01:00
Alexander Peltzer
dfdb46180d
Merge pull request #129 from nf-core/mseybold-patch-2
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Update cfc.md
2020-03-06 11:15:36 +01:00
Alexander Peltzer
edc34e7358
Merge pull request #128 from nf-core/mseybold-patch-1
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Update cfc.config
2020-03-06 11:15:16 +01:00
mseybold
48400b8863
Update RADME.md
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fixed link to cfc.md
2020-03-06 11:14:27 +01:00
mseybold
2135996b13
Update cfc.md
2020-03-06 11:12:21 +01:00
mseybold
52842de88b
Update cfc.config
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test failed, so added the the default queue
2020-03-06 10:46:37 +01:00
mseybold
8e42bbd7d0
Update cfc.config
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We just added some new HighMem nodes to the cfc, Partition/queue name is qbic, each node has 128Cores and 2TB of RAM.
The old queue (Name compute) is set to default by slurm.
Each process over 60GB of RAM or over 20cpus should run on those new nodes.
So added the queue State and adjusted the max_memory and max_cpu setting.
2020-03-06 10:25:08 +01:00
Evan Floden
44cd3089de
Alphabetical ordering of GitHub workflows
2020-03-06 09:48:00 +01:00
Evan Floden
87e8da61a4
Readme formatting
2020-03-06 05:58:59 +00:00
Evan Floden
8a9d3ad8a0
First commit of Google Cloud config
2020-03-06 05:47:29 +00:00
Alexander Peltzer
cd1932e9bb
Merge pull request #126 from phue/cbe-container-cache
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cbe: move container cache to different filesystem
2020-03-05 17:02:32 +01:00
phue
e2e4dd05d3
cbe: move container cache to different filesystem
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this is a workaround for squashfs errors that occur when containers are run from beeGFS
2020-03-05 16:34:20 +01:00
James A. Fellows Yates
116720e690
Merge pull request #125 from jfy133/master
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Try 'cleanup' profile option to by default cleanup work directory
2020-03-04 07:40:34 +01:00
James A. Fellows Yates
41a45187fa
Experiment to see if 'cleanup = true' works as expected
2020-03-03 16:47:49 +01:00
James A. Fellows Yates
5d8c4f9c50
Merge pull request #9 from nf-core/master
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Syncing
2020-03-03 16:46:09 +01:00
Johannes Alneberg
263230fdde
Merge pull request #124 from nf-core/Update-sarek-specific-UPPMAX-config
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Update sarek specific UPPMAX config
2020-02-28 07:38:34 +01:00
Maxime Garcia
9a8bb12020
Update conf/pipeline/sarek/uppmax.config
2020-02-27 17:22:03 +01:00
Maxime Garcia
8acbdacf03
Update conf/pipeline/sarek/uppmax.config
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Co-Authored-By: Johannes Alneberg <johannes.alneberg@scilifelab.se>
2020-02-27 17:21:03 +01:00
Maxime Garcia
09ff8f5790
Update conf/pipeline/sarek/uppmax.config
2020-02-27 17:02:31 +01:00
Maxime Garcia
17d6a7e922
Update conf/pipeline/sarek/uppmax.config
2020-02-27 17:02:13 +01:00
Maxime Garcia
ab8998e12b
Update uppmax.config
2020-02-27 16:52:51 +01:00
Phil Ewels
752a83b4c7
Merge pull request #123 from ewels/params-overwrite
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Remove params.custom_config_base from nf-core/configs
2020-02-27 12:23:04 +01:00
Phil Ewels
46b08c82e2
Remove params.custom_config_base from nf-core/configs
2020-02-27 11:53:38 +01:00
Maxime Garcia
47de9b8f76
Merge pull request #121 from MaxUlysse/Uppmax
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Uppmax
2020-02-27 11:11:12 +01:00
MaxUlysse
a8d338d2aa
Merge branch 'Uppmax' of github.com:MaxUlysse/nf-core_configs into Uppmax
2020-02-24 14:37:27 +01:00
MaxUlysse
9f74e88041
update file
2020-02-24 14:36:45 +01:00
Marc Hoeppner
6c5a5c8bcb
Removing old CCGA profile from docs and linting
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Removing CCGA profile from master config
Removing CCGA profile from master config
2020-02-24 12:16:33 +01:00