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Author	SHA1	Message	Date
nf-core-bot	cade84aacd	[automated] Fix linting with Prettier	2022-10-04 19:50:51 +00:00
Cedric	2825f33ded	conda env setup improvement	2022-10-02 19:15:59 -10:00
Cedric	d429a59a0d	add automounts for singularity	2022-10-02 18:44:22 -10:00
Cedric Arisdakessian	e89cb7bd5e	fix indentation	2022-10-03 03:49:04 +00:00
Cedric Arisdakessian	3b8b170203	added mana in gh actions	2022-10-03 03:47:03 +00:00
Cedric Arisdakessian	9cc679c811	fix mana name	2022-10-03 03:43:51 +00:00
Cedric Arisdakessian	7b1e360a35	added mana	2022-10-03 03:42:07 +00:00
Cedric Arisdakessian	9b710a07f5	add mana config	2022-10-03 03:41:23 +00:00
Cedric Arisdakessian	32cdea4b59	documentation for mana config	2022-10-03 03:38:48 +00:00
Cedric Arisdakessian	c479780d8f	create mana config	2022-10-03 03:38:20 +00:00
Bruno Grande	57f63add02	Merge pull request #417 from Sage-Bionetworks-Workflows/bgrande/sage-improve-downloads ... Improve reliability of file transfers with retries and reduced concurrency	2022-09-26 10:24:14 -07:00
Bruno Grande	735df9ef76	Merge branch 'master' into bgrande/sage-improve-downloads	2022-09-26 10:22:27 -07:00
Patrick Hüther	51ae760889	Merge pull request #413 from phue/biohpc_charliecloud_patch ... biohpc_gen: update required modules	2022-09-25 23:28:04 +02:00
James A. Fellows Yates	2b1141e9c9	Merge pull request #420 from SPPearce/crukmi ... Update crukmi.config	2022-09-23 15:14:43 +02:00
Simon Pearce	17c3767fef	Update crukmi.config ... Fix the singularity cache dir and add process_single.	2022-09-23 12:53:54 +01:00
Martin Proks	0d4ecaeb6d	Merge pull request #419 from AdrijaK/master ... add config for KU_SUND_DANGPU	2022-09-23 10:29:00 +02:00
AdrijaK	798d845a0d	run prettier	2022-09-22 14:21:02 +02:00
Adrija Kalvisa	65b6bf7c62	add ku_sund_dangpu	2022-09-22 13:37:45 +02:00
Adrija Kalvisa	339a072884	fix typo	2022-09-22 13:35:42 +02:00
Adrija Kalvisa	55d7b3fc00	add KU SUND DANGPU ... add the profile for Dangpu server hosted by Novo Nordisk Foundation Center for Stem Cell Medicine (reNEW)/ Novo Nordisk Foundation Center for Protein Research (CPR)	2022-09-22 13:35:08 +02:00
Adrija Kalvisa	5315ddd92f	add KU_SUND_DANGPU	2022-09-22 13:22:26 +02:00
Adrija Kalvisa	ce916bf4b5	fix typo	2022-09-22 13:21:10 +02:00
Adrija Kalvisa	2e9578498a	add ku_sund_dangpu.config	2022-09-22 13:20:42 +02:00
Adrija Kalvisa	7959b14385	Merge branch 'nf-core:master' into master	2022-09-22 13:15:32 +02:00
Austyn Trull	5400df135d	Merge pull request #412 from nf-core/cheaha_env_variable_updates ... Fix cheaha config due to use of incorrect variable	2022-09-21 13:38:24 -05:00
Patrick Hüther	85aa6adeed	Merge branch 'master' into biohpc_charliecloud_patch	2022-09-18 12:52:33 +02:00
Gisela Gabernet	89dc3c429f	Merge pull request #418 from ggabernet/master ... update cfc config maintenance	2022-09-18 12:07:43 +02:00
ggabernet	c709be3b59	update cfc config maintenance	2022-09-18 12:06:37 +02:00
Bruno Grande	8bb9361359	Improve reliability of file transfers	2022-09-17 10:14:04 -07:00
James A. Fellows Yates	c9c4d02f0d	Merge pull request #416 from jfy133/master ... Add HKI cluster	2022-09-15 09:18:00 +02:00
James A. Fellows Yates	ec638e62de	Apply suggestions from code review ... Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>	2022-09-15 09:10:29 +02:00
James A. Fellows Yates	b8751af6c6	Update conf/pipeline/mag/eva.config	2022-09-14 16:17:17 +02:00
James Fellows Yates	c0effc0366	Add HKI profile files	2022-09-14 15:34:27 +02:00
James A. Fellows Yates	8ea01e2041	Merge branch 'nf-core:master' into master	2022-09-14 15:01:34 +02:00
James A. Fellows Yates	3fcf708134	Merge pull request #414 from sheffield-bioinformatics-core/sbc_sharc ... Added global institutional and pipeline configs for sbc_sharc	2022-09-14 11:46:41 +02:00
Maxime U. Garcia	326ab0036e	Merge pull request #415 from Sage-Bionetworks-Workflows/bgrande/sage-tweaks ... Adjust AWS-related configuration to improve reliability	2022-09-14 11:31:10 +02:00
lquayle88	be356eb400	Ran prettier on docs/sbc_sharc.md	2022-09-14 10:24:56 +01:00
lquayle88	32403b6222	Updated pipeline config docs for atacseq, chipseq and rnaseq	2022-09-14 08:46:11 +01:00
lquayle88	91bfa7341f	Made changes requested for PR	2022-09-14 08:42:40 +01:00
Bruno Grande	3d3ee391be	Limit the number of parallel transfers	2022-09-13 13:15:30 -07:00
Lewis Quayle	61ae463606	Updated sbc_sharc.md	2022-09-13 17:13:57 +01:00
lquayle88	9fef35d7d3	Updated pipeline configs for atacseq and chipseq	2022-09-13 17:08:56 +01:00
lquayle88	a9b62c53e0	Added global institutional and pipeline configs for sbc_sharc	2022-09-13 17:02:44 +01:00
Bruno Grande	abae5c4bd8	Decrease AWS Batch queue size	2022-09-12 11:40:43 -07:00
phue	b20f28a3c9	biohpc_gen: load charliecloud from lrz software tree and remove conda fallback ... the biohpc_gen specific software tree is less maintained and outdated	2022-09-05 11:25:33 +02:00
Bruno Grande	47fa890ad7	Merge pull request #407 from Sage-Bionetworks-Workflows/bgrande/sage-aws ... Improve AWS-related config for Sage profile	2022-09-01 13:29:49 -07:00
Bruno Grande	80831358f9	Merge branch 'master' into bgrande/sage-aws	2022-09-01 13:21:36 -07:00
Lara Ianov	8448bb9a1e	re-define TMPDIR	2022-09-01 10:12:07 -05:00
Simon Pearce	6b83603325	Merge pull request #400 from SPPearce/crukmi ... Cancer Research UK Manchester Institute config	2022-09-01 14:01:00 +01:00
SPearce	a142ad7eae	Added link to Sarek specific documentation	2022-09-01 13:55:08 +01:00