lquayle88
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9fef35d7d3
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Updated pipeline configs for atacseq and chipseq
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2022-09-13 17:08:56 +01:00 |
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lquayle88
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a9b62c53e0
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Added global institutional and pipeline configs for sbc_sharc
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2022-09-13 17:02:44 +01:00 |
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Simon Pearce
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2c738cae33
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Update crukmi.config
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2022-09-01 11:24:11 +01:00 |
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Simon Pearce
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a8faeda141
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Update crukmi.config
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2022-09-01 11:23:07 +01:00 |
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SPearce
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800931bff2
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Add Sarek specific config
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2022-09-01 11:13:23 +01:00 |
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Annick Renevey
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51871ea6fc
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rnafusion setup for hasta usage
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2022-08-31 11:32:01 +02:00 |
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Harshil Patel
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8b9661825b
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Replace NC_063383.1 fasta and gff and add Nextclade config
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2022-08-24 15:21:44 +01:00 |
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Harshil Patel
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8dcfcfd856
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Add monkeypox genome files to viralrecon genome config file
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2022-08-24 12:13:17 +01:00 |
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Ramprasad Neethiraj
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9182b55acc
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Merge branch 'master' into feat/hasta_update
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2022-08-23 11:21:58 +02:00 |
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Ramprasad Neethiraj
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7ff2977a29
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Merge branch 'master' of github.com:nf-core/configs into feat/hasta_update
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2022-08-18 15:58:56 +02:00 |
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Ramprasad Neethiraj
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dd63dee7aa
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update conf
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2022-08-18 15:56:41 +02:00 |
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Ramprasad Neethiraj
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1c942759ea
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update sentieon
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2022-08-18 15:52:31 +02:00 |
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Ramprasad Neethiraj
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a6cce4ab6a
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Merge branch 'master' into feat/hasta_java_memory_fix
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2022-08-18 13:36:08 +02:00 |
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Harshil Patel
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2ab126fa4d
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Update default Nextclade dataset to 2022-06-14T12:00:00Z
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2022-07-11 18:28:41 +01:00 |
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James Fellows Yates
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acabcbd9e8
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Use _JAVA_OPTIONS instead
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2022-06-15 15:27:40 +02:00 |
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James Fellows Yates
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76b0d1dd85
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Merge branch 'eva-java-correction' of github.com:jfy133/nf-core-configs into eva-java-correction
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2022-06-15 15:22:25 +02:00 |
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James Fellows Yates
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58dd9d49c7
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Move beforeScript exports to env scope
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2022-06-15 15:21:20 +02:00 |
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Emil Bertilsson
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c8c795595a
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Merge branch 'nf-core:master' into feat/hasta_java_memory_fix
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2022-06-09 15:10:46 +02:00 |
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Emil Bertilsson
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72e995f326
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Adds generic fix for java memory issue on slurm
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2022-06-09 10:28:20 +02:00 |
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James A. Fellows Yates
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46fba9c597
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Update eva.config
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2022-06-03 21:10:48 +02:00 |
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James A. Fellows Yates
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05cc8a08f1
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Update eva.config
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2022-06-03 21:08:19 +02:00 |
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James Fellows Yates
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9ef52af084
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Increase overhead
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2022-06-03 14:24:27 +02:00 |
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James Fellows Yates
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c40ebb9acf
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Add overhead for get_software_versions
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2022-06-03 14:21:41 +02:00 |
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James Fellows Yates
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df0429ce9d
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Replace oracle specific _JAVA_OPTIONS to portable JAVA_TOOLS_OPTIONS
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2022-06-03 14:20:39 +02:00 |
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James A. Fellows Yates
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7353fb257d
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Merge pull request #380 from jfy133/taxprofiler
Add MAG @ EVA profile
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2022-06-03 12:54:47 +02:00 |
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James Fellows Yates
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5a67eba04c
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Add MAG @ EVA profile
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2022-06-03 12:41:08 +02:00 |
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Emil Bertilsson
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80e2a50a2f
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Merge pull request #378 from raysloks/feat/hasta_java_memory_fix
Feat/hasta java memory fix
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2022-05-30 14:40:52 +02:00 |
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Emil
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8453f6b41a
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Moves qualimap arg to pipeline-specific config
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2022-05-30 12:58:12 +02:00 |
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sofstam
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54b3cda34d
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Add review suggestion
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2022-05-12 11:00:26 +02:00 |
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sofstam
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c59149d64c
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Update docs for hasta config
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2022-05-12 10:47:03 +02:00 |
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James Fellows Yates
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e1f780d976
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Add taxprofiler for eVA
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2022-05-12 07:54:17 +01:00 |
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sofstam
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5bc6ed90bd
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Add hasta config for taxprofiler
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2022-05-11 11:13:31 +02:00 |
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Thiseas C. Lamnidis
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d09f5fc116
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Update eva.config
eigenstrat_snp_coverage also loads pandas
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2022-05-06 15:12:04 +02:00 |
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Thiseas C. Lamnidis
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209601f782
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missing bracket
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2022-05-04 13:08:13 +02:00 |
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Thiseas C. Lamnidis
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a42c4344ad
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Exclude bionode 06 for software versions
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2022-05-03 18:30:42 +02:00 |
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Thiseas C. Lamnidis
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79e227aa4e
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Update eva.config
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2022-05-03 16:42:21 +02:00 |
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Thiseas C. Lamnidis
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085726d081
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Update eva.config
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2022-05-03 16:36:05 +02:00 |
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Thiseas C. Lamnidis
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4592969613
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memory for get_software_versions in MB.
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2022-05-03 16:30:04 +02:00 |
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Thiseas C. Lamnidis
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79ad571319
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Update eva.config
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2022-05-03 16:25:48 +02:00 |
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Thiseas C. Lamnidis
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04226692fe
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Update eva.config
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2022-05-03 16:21:35 +02:00 |
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Thiseas C. Lamnidis
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57095fe79f
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Update eva.config
Set max heap size for java jobs in `get_software_versions`.
Limited OpenBLAS threading for python jobs that use numpy/pandas.
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2022-05-03 16:12:20 +02:00 |
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James A. Fellows Yates
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b5d9b79377
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Merge branch 'nf-core:master' into master
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2022-05-02 13:59:18 +02:00 |
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James A. Fellows Yates
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bf658abc77
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Update eva.config
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2022-05-02 13:59:13 +02:00 |
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Ramprasad Neethiraj
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40c965c76b
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fix sentieon errors
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2022-04-29 00:20:57 +02:00 |
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James A. Fellows Yates
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c1425c6c01
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Merge pull request #364 from jfy133/eva-update
Update eager @ eva.config to allow retry on post-processing FASTQ
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2022-04-22 11:47:10 +02:00 |
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Ramprasad Neethiraj
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9da85209f2
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change bcftools output format
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2022-04-22 11:05:56 +02:00 |
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Ramprasad Neethiraj
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447b3ee05d
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add beforescript for sentieon
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2022-04-22 11:03:09 +02:00 |
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James A. Fellows Yates
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a086878c0b
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Update eva.config
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2022-04-22 10:47:04 +02:00 |
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Ramprasad Neethiraj
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d39bec05dc
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fix typo
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2022-04-19 13:21:51 +02:00 |
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Ramprasad Neethiraj
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32207a2402
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update path so that the sentieon version is explicit
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2022-04-19 11:42:05 +02:00 |
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