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40 commits

Author SHA1 Message Date
James A. Fellows Yates
73b6b74c69
Merge pull request #279 from pierrespc/master 
Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris
 2021-10-08 19:15:47 +02:00
pierrespc
e5d4a357c5 clean doc 2021-10-04 15:08:01 +02:00
pierrespc
f6266879d6 edited maestronuclear and maestromitocondrial configs. The latter has not been optimized yet 2021-09-29 13:47:35 +02:00
pierrespc
b71df6fe57 renamed eager pipeline config file 2021-09-29 13:22:07 +02:00
pierrespc
9ea3e2096a long and normal qos profiles defined now in an unique maestro config file. maestro.config also defined in pipeline/eager for ressources assignation to specific processes 2021-09-29 13:11:14 +02:00
Mei Wu
79a79f7d8d added pipeline-specific config 2021-09-28 10:38:25 +02:00
James Fellows Yates
59af7f0eee Delete SHH profiles due to decommissioning 2021-08-20 10:15:39 +02:00
ameynert
17fad9dd15
Update pipeline/viralrecon.config 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2021-07-21 12:27:09 +01:00
ameynert
d9abb7d59f
Added eddie config to viralrecon 2021-07-21 12:23:47 +01:00
Edmund Miller
f9e4ec4a8d
fix(sysbio): Add sysbio to rnaseq 2021-06-17 09:18:45 -05:00
Gisela Gabernet
4e9e5d2c67
Merge branch 'master' into cfc_sarek 2021-04-23 16:47:04 +02:00
James A. Fellows Yates
832edaa450
Merge branch 'master' into eva 2021-04-06 17:51:46 +02:00
ameyner2
da8cf2f207 Added pipeline-specific config files for rnaseq and sarek 2021-03-24 10:46:26 +00:00
FriederikeHanssen
162c212dd4 Remove extra line 2021-03-10 11:17:23 +01:00
FriederikeHanssen
eb9012919c Set values for processes with max_mem/max_cpus 2021-03-10 11:16:18 +01:00
James A. Fellows Yates
4339e5872c
Update eager.config 2021-02-14 18:05:06 +01:00
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
James A. Fellows Yates
4f991d2c0c
Update eager.config 2020-09-04 19:59:27 +02:00
Alexander Peltzer
f877644059
Merge branch 'master' into master 2020-05-29 11:43:47 +02:00
MaxUlysse
e6f4d58fa6 update rnafusion munin specific config 2020-04-28 17:06:04 +02:00
Harshil Patel
53125368be
Merge branch 'master' into viralreconupdate 2020-04-09 18:21:05 +01:00
Harshil Patel
6834f020cb
Update viralrecon.config 2020-04-09 17:49:15 +01:00
MaxUlysse
5678494e45 fix typo 2020-04-09 17:13:19 +02:00
MaxUlysse
50a44d037b better docs and organisation of giles 2020-04-09 17:02:36 +02:00
Harshil Patel
4fd9b73cec
Update pipeline/viralrecon.config 2020-04-09 13:31:39 +01:00
Harshil Patel
290d0a2180
Update pipeline/viralrecon.config 2020-04-09 13:31:20 +01:00
MaxUlysse
19316ce852 add viralrecon specific config 2020-04-09 13:40:35 +02:00
Daniel Lundin
e0f9374272
Update pipeline/ampliseq.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2020-03-31 15:33:19 +02:00
Daniel Lundin
5a557ed7d5
Update pipeline/ampliseq.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2020-03-31 15:33:12 +02:00
Daniel Lundin
79ef94de47
Update pipeline/ampliseq.config 
Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2020-03-31 15:33:04 +02:00
Daniel Lundin
c8de9be701 Adding UPPMAX specific config for ampliseq 2020-03-31 15:17:24 +02:00
Adrian Larkeryd
02d8b81af4 adding icr_davros as profiles 2020-03-04 16:02:11 +00:00
MaxUlysse
aa905cd645 add UPPMAX specific sarek config 2020-02-20 17:14:18 +01:00
Alexander Peltzer
a6d08ed646
Adjust custom pipeline config for ampliseq on BINAC 2019-12-11 16:09:44 +01:00
jfy133
731372dac2 Added SHH specific EAGER configuration 2019-12-05 17:01:10 +01:00
MaxUlysse
25d4e92935 update docs 2019-11-26 11:55:36 +01:00
Maxime Garcia
83f677216b Update pipeline/sarek.config 2019-11-26 11:54:18 +01:00
MaxUlysse
283abcece4 update docs 2019-11-26 11:25:29 +01:00
Maxime Garcia
43f6f55ba2 Update pipeline/sarek.config 2019-11-26 11:25:29 +01:00
MaxUlysse
cd1d0b5f8f Add specific sarek config base, munin specific sarek config and docs 
rename file

improve configs

remove unnecessary params
 2019-11-26 11:25:29 +01:00