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Author SHA1 Message Date
Michael Borg
cc380ce9a1
Update mpcdf.config 
Added polling frequencies to the config as requested by MPCDF admin. Also updated the number of (real) cores on Raven.
 2022-02-02 13:33:03 +01:00
James Fellows Yates
2562a2f563 Remove virtual free 2022-02-02 08:06:00 +01:00
James A. Fellows Yates
8739aabbf0
Bump markduplicates by default 2022-02-02 08:00:13 +01:00
Austyn Trull
1c9e1bf8a1 Fixing syntax in cheaha profile 2022-01-28 14:18:57 -06:00
Lara Ianov
f876227a38 added note on screen, conda, and interactive partitions 2022-01-28 12:18:11 -06:00
Lara Ianov
9c0d550222
max_memory increase to reflect largemem 2022-01-28 11:45:13 -06:00
Austyn Trull
06541411dd Initial commit of cheaha profile 2022-01-28 11:37:42 -06:00
Harshil Patel
9792226f5c
Update genomes.config 2022-01-27 12:45:41 +00:00
Praveen Raj S
5c1afd56bf
Added genome parameter 
Added genome parameter to the config file
 2022-01-20 22:25:31 +01:00
Harshil Patel
c49abc2e61
Merge pull request #316 from drpatelh/nextclade 
Add --nextclade_dataset params
 2022-01-17 17:35:31 +00:00
Harshil Patel
cd6b8e0f17 Add --nextclade_dataset params 2022-01-17 16:51:55 +00:00
Harshil Patel
a680207b55
Merge pull request #315 from drpatelh/nextclade 
Add Nextclade genome details to viralrecon genome config
 2022-01-17 11:46:47 +00:00
Harshil Patel
f26c465bd4 Add Nextclade genome details to viralrecon genome config 2022-01-17 11:27:10 +00:00
James A. Fellows Yates
4546e0f389
Merge pull request #314 from jfy133/master 
Update eager@eva to add java buffer for bbduk
 2022-01-14 07:40:56 +01:00
James A. Fellows Yates
5fd5c43906
Update eva.config 2022-01-14 07:03:05 +01:00
Maxime U. Garcia
61682f33b3
Merge pull request #310 from nf-core/praveenraj2018-patch-1 
Updated sentieon version through a new module file
 2022-01-10 12:04:20 +01:00
ameynert
bfa7e0f8d7
Merge pull request #313 from nf-core/ameynert-patch-1 
Added memory & cluster options specification for eddie sarek config
 2022-01-06 10:38:13 +00:00
ameynert
0f56588acc
Added memory & cluster options specification for eddie sarek config 2022-01-06 10:15:34 +00:00
praveenraj2018
53ab5ee34f
Updated sentieon version through a new module file 
A local module file has been created to run the latest version of Sentieon. Doing this change, as the new version of Sentieon has only a dependency library update, hence it should not break the Sentieon pipeline. Tested locally with a test.conf having the new process block.
 2021-12-21 15:21:59 +01:00
Kevin Brick
1abb1c2d95
Merge pull request #309 from kevbrick/master 
Added config for NIH Biowulf Cluster
 2021-12-20 13:05:19 -05:00
Kevin Brick
82c7d553a7
Update bind-paths 2021-12-20 11:29:09 -05:00
Kevin Brick
afb6fbb767
Trailing spaces 2021-12-17 00:46:50 -05:00
Kevin Brick
05f7b59573
Update nihbiowulf.md 2021-12-17 00:44:39 -05:00
Kevin Brick
74448de49e
Update main.yml 
add nihbiowulf
 2021-12-17 00:40:43 -05:00
Kevin Brick
e523e28861
Update README.md 2021-12-17 00:39:21 -05:00
Kevin Brick
de6d3bdd5f
Update nfcore_custom.config 2021-12-17 00:38:07 -05:00
Kevin Brick
9cf4f69ff3
Add files via upload 2021-12-17 00:37:11 -05:00
Kevin Brick
87e4ece034
Add files via upload 2021-12-17 00:36:51 -05:00
Venkat Malladi
38295dfbbd
Merge pull request #308 from vsmalladi/master 
Fix name of Params
 2021-12-16 14:11:53 -06:00
Venkat Malladi
306c802b4e
Fix name of Params 2021-12-16 09:27:23 -06:00
PCQ
698555f801
Rename marvin.conf to marvin.config 2021-12-15 14:44:05 +01:00
Maxime U. Garcia
58fe1a5808
Merge pull request #307 from nf-core/praveenraj2018-patch-1 
Renamed star_index directory
 2021-12-14 21:38:15 +01:00
praveenraj2018
00a3ed0fa6
Formatting 2021-12-14 21:24:18 +01:00
praveenraj2018
0557f4e062
Renamed star_index directory 2021-12-14 21:15:12 +01:00
praveenraj2018
e4410065f3
Merge pull request #306 from praveenraj2018/rnavar_munin 
Added rnavar pipeline config for Munin
 2021-12-14 16:10:59 +01:00
Maxime U. Garcia
5e92e2ef11
Update conf/pipeline/rnavar/munin.config 2021-12-14 16:10:31 +01:00
Praveen
4c6e7262c2 Updated README.md 2021-12-14 04:04:17 +01:00
Praveen
cc1fe5b5a0 Addressed review feedback 2021-12-14 03:58:54 +01:00
Praveen
b4d5330c0e Added rnavar pipeline config for Munin 2021-12-14 03:52:37 +01:00
PCQ
3a61adb69b
Rename Marvin.conf to marvin.conf 2021-12-13 11:38:48 +01:00
PCQ
2d02848075
added marvin.md link 2021-12-10 17:40:44 +01:00
PCQ
a72f1a243c
Create marvin.md 2021-12-10 17:39:32 +01:00
PCQ
a8bdd102e2
added path to Marvin.conf 2021-12-10 17:13:47 +01:00
PCQ
50d90cd686
Marvin Cluster addition 
Added the config for the Marvin cluster of the Universitat Pompeu Fabra (UPF)
 2021-12-10 17:11:43 +01:00
James A. Fellows Yates
71b17ff970
Merge pull request #301 from jfy133/eva 
eager@eva: and bump the second samtools_flagstat process overhead 🙄
 2021-12-07 11:04:33 +01:00
James A. Fellows Yates
55f452d81e
Update eva.config 2021-12-07 09:27:28 +01:00
James A. Fellows Yates
f7b5a8e800
Merge pull request #300 from jfy133/eva 
eager @ eva: reintroduce bionode8, bump overhead for flagstat
 2021-12-03 11:16:24 +01:00
James Fellows Yates
e8252ad61c Reintroduce bionode8, bump overhead for flagstat 2021-12-03 08:36:31 +01:00
James A. Fellows Yates
f8246b8554
Merge pull request #299 from jfy133/eva 
Exclude bionode8 for eager@eva
 2021-12-02 10:57:44 +01:00
James Fellows Yates
06b40798c0 Exclude bionode8 2021-12-02 10:35:35 +01:00