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751 commits

Author SHA1 Message Date
arontommi
e6bb7a4852 capital names 2020-11-26 11:37:59 +01:00
arontommi
5726ef3456 typo 2020-11-26 11:26:08 +01:00
arontommi
06469901fe typo 2020-11-26 11:24:29 +01:00
arontommi
ebf754bf43 documentation for bianca 2020-11-26 09:53:51 +01:00
Phil Ewels
d134286487
Merge pull request #190 from ewels/uppmax-docs
Better UPPMAX docs
2020-11-26 01:43:47 +01:00
Phil Ewels
e96455e180
Update docs/uppmax.md 2020-11-26 01:43:09 +01:00
Phil Ewels
d9a8009662 Better UPPMAX docs 2020-11-25 22:45:16 +01:00
James A. Fellows Yates
f3c7b36e3d
Merge pull request #189 from nf-core/TCLamnidis-patch-1
Move sdag queue specification block in sdag profile
2020-11-18 13:16:54 +01:00
Thiseas C. Lamnidis
71d1ff2226
Add params block to sdag queue
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2020-11-18 13:04:46 +01:00
Thiseas C. Lamnidis
da781907f2
Move sdag queue specification block in sdag profile 2020-11-17 19:45:06 +01:00
Harshil Patel
be9cb33ac1
Merge pull request #188 from andrewfrank/patch-1
Fix parameters in google.md
2020-11-12 17:12:41 +00:00
Andrew Frank
d70fc2605a
Fix parameters in google.md
Change parameters from hyphens to underscores to accurately reflect google.config
2020-11-12 11:52:58 -05:00
Maxime Borry
c95fd9d52f
Merge pull request #186 from jfy133/shh-singularity-runoptions
Remove custom singularity runOptions from SHH config
2020-11-10 15:39:40 +01:00
James A. Fellows Yates
9d4d682867
Update shh.config 2020-11-10 15:14:03 +01:00
Maxime Garcia
3cc3445549
Merge pull request #183 from abims-sbr/abims
Add ABiMS
2020-10-23 09:57:20 +02:00
lecorguille
e3d733d87e Add ABiMS - fix lint 2020-10-23 09:29:54 +02:00
lecorguille
4d03f72c78 Add ABiMS - last bits of doc 2020-10-23 09:27:12 +02:00
lecorguille
6ee6b7bf56 Add ABiMS - remove a useless link 2020-10-23 00:12:02 +02:00
lecorguille
c974972585 Add ABiMS - side files 2020-10-23 00:12:02 +02:00
lecorguille
23ba1c58b1 Add ABiMS - NXF_SINGULARITY_CACHEDIR 2020-10-23 00:11:58 +02:00
lecorguille
90d1f9072b Add ABiMS - autoMounts = false 2020-10-22 18:18:55 +02:00
lecorguille
f21d16b24f Add ABiMS - fix lint 2020-10-22 17:47:25 +02:00
lecorguille
a63ca751ee Add ABiMS 2020-10-22 16:57:41 +02:00
James A. Fellows Yates
804f53c58c
Merge pull request #178 from jfy133/master
Add Max Planck Computing and Data Facility Cobra/Raven Clusters
2020-10-22 13:34:11 +02:00
James A. Fellows Yates
7088ed196f
Update mpcdf.md 2020-10-22 11:08:29 +02:00
James A. Fellows Yates
3995057d7f
Update mpcdf.config 2020-10-22 10:42:46 +02:00
James A. Fellows Yates
0d6e269322
Update mpcdf.md 2020-10-15 14:24:08 +02:00
James A. Fellows Yates
05deeca2d6
Update mpcdf.config 2020-10-15 14:22:35 +02:00
James A. Fellows Yates
2c2d23ac26
Merge pull request #181 from nf-core/shh-patch
Update SHH profile to reduce number of parallel jobs
2020-09-29 14:24:12 +02:00
James A. Fellows Yates
e26c22b2f1
Update shh.config 2020-09-29 14:03:35 +02:00
Johannes Alneberg
59cd8d69ed
Merge pull request #180 from MaxUlysse/rackham
Rackham
2020-09-29 10:31:04 +02:00
MaxUlysse
2ccbdd3367 update params to latest version 2020-09-28 13:59:42 +02:00
MaxUlysse
8c0cc4b9ec code polishing 2020-09-25 09:57:50 +02:00
MaxUlysse
81f910cc95 add specific BamQC config 2020-09-25 09:49:43 +02:00
MaxUlysse
fbe7bd133a update uppmax specific sarek config 2020-09-25 08:33:53 +02:00
James A. Fellows Yates
11f1fb71db
Update mpcdf.config 2020-09-16 10:21:58 +02:00
James A. Fellows Yates
bbbdd3cb0f
Update mpcdf.config 2020-09-16 10:21:42 +02:00
James A. Fellows Yates
5b3492d240
Update mpcdf.config 2020-09-16 10:21:26 +02:00
James A. Fellows Yates
3115963b3e
Update mpcdf.config 2020-09-15 19:53:27 +02:00
James A. Fellows Yates
c6f7573d01
Update mpcdf.config 2020-09-15 17:48:54 +02:00
James A. Fellows Yates
bf87ec24e7
Update mpcdf.config 2020-09-15 17:45:38 +02:00
Edmund Miller
87c757dc47
Merge pull request #179 from Emiller88/utd
feat: add Kim queue
2020-09-14 10:28:43 -05:00
Edmund Miller
2c06019d89
fix(utd): Add check for less than 12 cpu 2020-09-13 20:46:14 -05:00
Edmund Miller
dc2735207e
feat(utd): add Kim queue 2020-09-13 20:46:10 -05:00
James A. Fellows Yates
3b7902d11b
Mad multi-core increase CPUs on retry 2020-09-06 08:23:35 +02:00
James A. Fellows Yates
4335e5deb7
Update mpcdf.config 2020-09-04 20:17:09 +02:00
James A. Fellows Yates
af8d25ed09
Update main.yml 2020-09-04 20:14:35 +02:00
James A. Fellows Yates
4f991d2c0c
Update eager.config 2020-09-04 19:59:27 +02:00
James A. Fellows Yates
b4e275c3b9
Add MPCDF for EAGER 2020-09-04 19:57:25 +02:00
James A. Fellows Yates
5c7ab234b6
Create mpcdf.config 2020-09-04 19:55:40 +02:00