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315 commits

Author SHA1 Message Date
James A. Fellows Yates
a6c12d8edc
Merge pull request #322 from U-BDS/master
Add UAB Cheaha profile
2022-03-01 08:29:54 +01:00
James A. Fellows Yates
4fbebac9b3
Merge pull request #304 from PCQuilis/patch-1
Create marvin.md added marvin config
2022-02-28 15:03:07 +01:00
James A. Fellows Yates
d6f5209afc
Update marvin.md 2022-02-28 15:01:12 +01:00
Combiz Khozoie
a77f718ae2
Merge pull request #330 from nf-core/master
Pulling master to branch
2022-02-11 14:18:01 +00:00
Matthias Hörtenhuber
b98ab26662 fix markdownlint errors 2022-02-11 14:09:16 +01:00
Combiz Khozoie
34d9e7a967
Update imperial.md
Updated docs to reflect use of internal profiles
2022-02-11 00:08:08 +00:00
Combiz Khozoie
5aa1abda26
Delete imperial_mb.md
Deprecated in favour of internal profiles within the single imperial.config
2022-02-11 00:07:05 +00:00
Combiz Khozoie
14c7662762
Update imperial.md
Updated docs to reflect restructuring for internal profiles
2022-02-10 23:49:43 +00:00
phue
a6dd3aa0f1 cbe: update recommended nextflow version in docs
otherwise, the new anaconda requirements will cause conflicts
2022-02-04 10:21:52 +01:00
Lara Ianov
f876227a38 added note on screen, conda, and interactive partitions 2022-01-28 12:18:11 -06:00
Austyn Trull
06541411dd Initial commit of cheaha profile 2022-01-28 11:37:42 -06:00
Kevin Brick
afb6fbb767
Trailing spaces 2021-12-17 00:46:50 -05:00
Kevin Brick
05f7b59573
Update nihbiowulf.md 2021-12-17 00:44:39 -05:00
Kevin Brick
9cf4f69ff3
Add files via upload 2021-12-17 00:37:11 -05:00
praveenraj2018
00a3ed0fa6
Formatting 2021-12-14 21:24:18 +01:00
Praveen
b4d5330c0e Added rnavar pipeline config for Munin 2021-12-14 03:52:37 +01:00
PCQ
a72f1a243c
Create marvin.md 2021-12-10 17:39:32 +01:00
Venkat Malladi
d722e7206e Fix readme to remove blob account. 2021-11-18 18:06:54 -06:00
Phil Ewels
4785ceccba
Merge pull request #245 from ikeller/unibe_ibu
Unibe ibu
2021-11-19 00:56:25 +01:00
Phil Ewels
b25bd1ce42
Update docs/azurebatch.md 2021-11-19 00:54:39 +01:00
Venkat Malladi
ed4c1d5f22 Remove work_dir option. 2021-11-18 17:52:24 -06:00
Phil Ewels
286fa6753a
Apply suggestions from code review 2021-11-19 00:07:33 +01:00
Phil Ewels
a26b3bf1e3
Merge branch 'master' into unibe_ibu 2021-11-19 00:02:30 +01:00
Venkat Malladi
f25dc57f00 Fix headers. 2021-11-18 15:50:12 -06:00
Venkat Malladi
1dacc2f3fe Fix liniting errors in headers. 2021-11-18 15:49:08 -06:00
Venkat Malladi
845a9ce971 Update Readme with more inforamtion on the options. 2021-11-18 15:47:27 -06:00
Venkat Malladi
219244f1b4 Add in sample datastorage for Illumina Platinum genomes. 2021-11-18 15:28:34 -06:00
Venkat Malladi
237f91a3b7 Add in minmum config for azure. 2021-11-18 14:51:39 -06:00
Harshil Patel
a098ad9e06 Add Chris as main contact at The Crick 2021-11-03 11:11:05 +00:00
James A. Fellows Yates
73b6b74c69
Merge pull request #279 from pierrespc/master
Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris
2021-10-08 19:15:47 +02:00
James A. Fellows Yates
98bbc2b744
Linting 2021-10-08 14:11:39 +02:00
James A. Fellows Yates
b26e495e19
Apply suggestions from code review 2021-10-08 14:08:51 +02:00
pierrespc
2d102eafbc format docs 2021-10-08 13:46:47 +02:00
pierrespc
035ab61f61 added unlimitedtime profile to maestro; changed cache for bwa process 2021-10-08 09:05:46 +02:00
pierrespc
1621585558 improving documentation 2021-10-04 16:08:33 +02:00
pierrespc
e5d4a357c5 clean doc 2021-10-04 15:08:01 +02:00
pierrespc
136fd44e0c corrected docs/maestro.config 2021-09-29 13:50:56 +02:00
James A. Fellows Yates
e8b48416bc
Update docs/alice.md 2021-09-28 12:52:31 +02:00
Bjørn Peare Bartholdy
ad83430632
Update docs/alice.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-09-28 12:43:54 +02:00
Bjørn Peare Bartholdy
197bd6cfb1
Merge branch 'nf-core:master' into master 2021-09-28 12:09:50 +02:00
bbartholdy
b6ccb46383 add ALICE profile 2021-09-28 12:08:27 +02:00
Mei Wu
c2d74b290a fix md 2021-09-27 16:25:02 +02:00
Mei Wu
a8a2027f70
Merge branch 'master' into hasta 2021-09-27 16:12:23 +02:00
Mei Wu
ae0adb056f initial commit 2021-09-27 16:05:19 +02:00
pierrespc
3b593d46ec merged two pasteur config files for maestro 2021-09-20 15:14:50 +02:00
Harshil Patel
5068e4806f
Merge pull request #271 from theoportlock/master
Adds Rosalind config for KCL!
2021-09-17 13:36:19 +01:00
theoportlock
0fd5265f7b Updates the README 2021-09-17 13:21:38 +02:00
pierrespc
b9682bbc91 requires files edited 2021-09-16 12:53:17 +02:00
Marc Trunjer Kusk Nielsen
9a8644ef43
Update computerome.md 2021-09-15 11:10:02 +02:00
Marc Trunjer Kusk Nielsen
cf899a2a4e
Update computerome.md 2021-09-13 08:48:27 +02:00