Thiseas C. Lamnidis
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71d1ff2226
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Add params block to sdag queue
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2020-11-18 13:04:46 +01:00 |
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Thiseas C. Lamnidis
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da781907f2
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Move sdag queue specification block in sdag profile
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2020-11-17 19:45:06 +01:00 |
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Maxime Borry
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c95fd9d52f
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Merge pull request #186 from jfy133/shh-singularity-runoptions
Remove custom singularity runOptions from SHH config
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2020-11-10 15:39:40 +01:00 |
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James A. Fellows Yates
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9d4d682867
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Update shh.config
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2020-11-10 15:14:03 +01:00 |
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lecorguille
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90d1f9072b
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Add ABiMS - autoMounts = false
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2020-10-22 18:18:55 +02:00 |
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lecorguille
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a63ca751ee
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Add ABiMS
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2020-10-22 16:57:41 +02:00 |
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James A. Fellows Yates
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804f53c58c
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Merge pull request #178 from jfy133/master
Add Max Planck Computing and Data Facility Cobra/Raven Clusters
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2020-10-22 13:34:11 +02:00 |
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James A. Fellows Yates
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3995057d7f
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Update mpcdf.config
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2020-10-22 10:42:46 +02:00 |
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James A. Fellows Yates
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05deeca2d6
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Update mpcdf.config
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2020-10-15 14:22:35 +02:00 |
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James A. Fellows Yates
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e26c22b2f1
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Update shh.config
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2020-09-29 14:03:35 +02:00 |
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MaxUlysse
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2ccbdd3367
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update params to latest version
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2020-09-28 13:59:42 +02:00 |
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MaxUlysse
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8c0cc4b9ec
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code polishing
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2020-09-25 09:57:50 +02:00 |
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MaxUlysse
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81f910cc95
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add specific BamQC config
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2020-09-25 09:49:43 +02:00 |
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MaxUlysse
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fbe7bd133a
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update uppmax specific sarek config
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2020-09-25 08:33:53 +02:00 |
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James A. Fellows Yates
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11f1fb71db
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Update mpcdf.config
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2020-09-16 10:21:58 +02:00 |
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James A. Fellows Yates
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bbbdd3cb0f
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Update mpcdf.config
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2020-09-16 10:21:42 +02:00 |
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James A. Fellows Yates
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5b3492d240
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Update mpcdf.config
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2020-09-16 10:21:26 +02:00 |
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James A. Fellows Yates
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3115963b3e
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Update mpcdf.config
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2020-09-15 19:53:27 +02:00 |
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James A. Fellows Yates
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c6f7573d01
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Update mpcdf.config
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2020-09-15 17:48:54 +02:00 |
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James A. Fellows Yates
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bf87ec24e7
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Update mpcdf.config
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2020-09-15 17:45:38 +02:00 |
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Edmund Miller
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2c06019d89
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fix(utd): Add check for less than 12 cpu
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2020-09-13 20:46:14 -05:00 |
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Edmund Miller
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dc2735207e
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feat(utd): add Kim queue
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2020-09-13 20:46:10 -05:00 |
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James A. Fellows Yates
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3b7902d11b
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Mad multi-core increase CPUs on retry
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2020-09-06 08:23:35 +02:00 |
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James A. Fellows Yates
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4335e5deb7
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Update mpcdf.config
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2020-09-04 20:17:09 +02:00 |
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James A. Fellows Yates
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b4e275c3b9
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Add MPCDF for EAGER
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2020-09-04 19:57:25 +02:00 |
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James A. Fellows Yates
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5c7ab234b6
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Create mpcdf.config
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2020-09-04 19:55:40 +02:00 |
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James A. Fellows Yates
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0a685c1cc2
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Update mpcdf.config
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2020-09-03 20:24:11 +02:00 |
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James A. Fellows Yates
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42a1a15970
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Create mpcdf.config
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2020-09-03 20:11:56 +02:00 |
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James A. Fellows Yates
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c3fa87e4bc
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Add microbiome screening profile for NT sized MALT runs for nf-core/eager@SHH
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2020-08-11 09:18:36 +02:00 |
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drpatelh
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b804076959
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Remove hard Singularity version
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2020-08-03 11:38:10 +01:00 |
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maxibor
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69a0bd572b
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add temporary CDAG setting for SHH config
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2020-07-23 15:38:28 +02:00 |
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James A. Fellows Yates
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d38ffc289b
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Merge pull request #173 from jfy133/shh-eager-hops-update
Remove now deprecated EAGER flag for HOPS profile
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2020-07-20 11:34:49 +02:00 |
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James A. Fellows Yates
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57ac9257a9
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Remove now deprecated EAGER flag for HOPS profile
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2020-07-20 11:29:12 +02:00 |
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Alexander Peltzer
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a498e98342
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Merge pull request #170 from jfy133/master
Make walltimes more sophisticated and add a HOPS profile for nf-core/eager @ SHH
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2020-07-15 15:11:24 +02:00 |
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James A. Fellows Yates
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84e03b8264
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Re-bump default walltimes after debugging/testing
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2020-07-11 18:31:04 +02:00 |
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James A. Fellows Yates
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8f6409d144
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Remove min support percent value to avoid confusion
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2020-07-08 15:26:19 +02:00 |
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James A. Fellows Yates
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1af9ce293c
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Update hops profile based on requests from pathogen group
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2020-07-08 15:22:33 +02:00 |
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James A. Fellows Yates
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c57a404f18
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Add desc for hops
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2020-07-08 10:45:43 +02:00 |
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jfy133
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15dad7e2e7
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Add caveats for EAGER @ SHH profiles
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2020-07-08 09:47:03 +02:00 |
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jfy133
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926c14f7ee
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Cleverer process time submission
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2020-07-08 09:36:56 +02:00 |
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jfy133
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563c27e1bb
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Try again to get better time resource submission
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2020-07-08 09:36:28 +02:00 |
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James A. Fellows Yates
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c6905b609e
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Update shh.config
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2020-07-08 09:25:21 +02:00 |
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James A. Fellows Yates
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b360ce26bc
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Update shh.config
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2020-07-08 09:24:06 +02:00 |
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James A. Fellows Yates
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31edb4b5d7
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Update shh.config
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2020-07-08 09:20:00 +02:00 |
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James A. Fellows Yates
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aac3478e86
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Add better task time values to account for large data
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2020-07-08 09:12:11 +02:00 |
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James A. Fellows Yates
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737d826932
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Update shh.config
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2020-07-08 08:36:04 +02:00 |
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piotr-faba-ardigen
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ba24f1a1c8
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Merge pull request #168 from piotr-faba-ardigen/add_bi_config
Fix bi config
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2020-07-07 14:56:43 +02:00 |
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James A. Fellows Yates
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fcdbeaa446
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Merge branch 'master' into master
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2020-07-07 14:34:10 +02:00 |
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James A. Fellows Yates
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af01fccba1
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Add a HOPS profile for nf-core/eager @ SHH
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2020-07-07 14:31:11 +02:00 |
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Piotr Faba
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cb7a6f756a
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reduce complexity
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2020-07-07 13:48:28 +02:00 |
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