304 commits

Author	SHA1	Message	Date
phue	a6dd3aa0f1	cbe: update recommended nextflow version in docs ... otherwise, the new anaconda requirements will cause conflicts	2022-02-04 10:21:52 +01:00
Kevin Brick	afb6fbb767	Trailing spaces	2021-12-17 00:46:50 -05:00
Kevin Brick	05f7b59573	Update nihbiowulf.md	2021-12-17 00:44:39 -05:00
Kevin Brick	9cf4f69ff3	Add files via upload	2021-12-17 00:37:11 -05:00
praveenraj2018	00a3ed0fa6	Formatting	2021-12-14 21:24:18 +01:00
Praveen	b4d5330c0e	Added rnavar pipeline config for Munin	2021-12-14 03:52:37 +01:00
Venkat Malladi	d722e7206e	Fix readme to remove blob account.	2021-11-18 18:06:54 -06:00
Phil Ewels	4785ceccba	Merge pull request #245 from ikeller/unibe_ibu ... Unibe ibu	2021-11-19 00:56:25 +01:00
Phil Ewels	b25bd1ce42	Update docs/azurebatch.md	2021-11-19 00:54:39 +01:00
Venkat Malladi	ed4c1d5f22	Remove work_dir option.	2021-11-18 17:52:24 -06:00
Phil Ewels	286fa6753a	Apply suggestions from code review	2021-11-19 00:07:33 +01:00
Phil Ewels	a26b3bf1e3	Merge branch 'master' into unibe_ibu	2021-11-19 00:02:30 +01:00
Venkat Malladi	f25dc57f00	Fix headers.	2021-11-18 15:50:12 -06:00
Venkat Malladi	1dacc2f3fe	Fix liniting errors in headers.	2021-11-18 15:49:08 -06:00
Venkat Malladi	845a9ce971	Update Readme with more inforamtion on the options.	2021-11-18 15:47:27 -06:00
Venkat Malladi	219244f1b4	Add in sample datastorage for Illumina Platinum genomes.	2021-11-18 15:28:34 -06:00
Venkat Malladi	237f91a3b7	Add in minmum config for azure.	2021-11-18 14:51:39 -06:00
Harshil Patel	a098ad9e06	Add Chris as main contact at The Crick	2021-11-03 11:11:05 +00:00
James A. Fellows Yates	73b6b74c69	Merge pull request #279 from pierrespc/master ... Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris	2021-10-08 19:15:47 +02:00
James A. Fellows Yates	98bbc2b744	Linting	2021-10-08 14:11:39 +02:00
James A. Fellows Yates	b26e495e19	Apply suggestions from code review	2021-10-08 14:08:51 +02:00
pierrespc	2d102eafbc	format docs	2021-10-08 13:46:47 +02:00
pierrespc	035ab61f61	added unlimitedtime profile to maestro; changed cache for bwa process	2021-10-08 09:05:46 +02:00
pierrespc	1621585558	improving documentation	2021-10-04 16:08:33 +02:00
pierrespc	e5d4a357c5	clean doc	2021-10-04 15:08:01 +02:00
pierrespc	136fd44e0c	corrected docs/maestro.config	2021-09-29 13:50:56 +02:00
James A. Fellows Yates	e8b48416bc	Update docs/alice.md	2021-09-28 12:52:31 +02:00
Bjørn Peare Bartholdy	ad83430632	Update docs/alice.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2021-09-28 12:43:54 +02:00
Bjørn Peare Bartholdy	197bd6cfb1	Merge branch 'nf-core:master' into master	2021-09-28 12:09:50 +02:00
bbartholdy	b6ccb46383	add ALICE profile	2021-09-28 12:08:27 +02:00
Mei Wu	c2d74b290a	fix md	2021-09-27 16:25:02 +02:00
Mei Wu	a8a2027f70	Merge branch 'master' into hasta	2021-09-27 16:12:23 +02:00
Mei Wu	ae0adb056f	initial commit	2021-09-27 16:05:19 +02:00
pierrespc	3b593d46ec	merged two pasteur config files for maestro	2021-09-20 15:14:50 +02:00
Harshil Patel	5068e4806f	Merge pull request #271 from theoportlock/master ... Adds Rosalind config for KCL!	2021-09-17 13:36:19 +01:00
theoportlock	0fd5265f7b	Updates the README	2021-09-17 13:21:38 +02:00
pierrespc	b9682bbc91	requires files edited	2021-09-16 12:53:17 +02:00
Marc Trunjer Kusk Nielsen	9a8644ef43	Update computerome.md	2021-09-15 11:10:02 +02:00
Marc Trunjer Kusk Nielsen	cf899a2a4e	Update computerome.md	2021-09-13 08:48:27 +02:00
Marc Trunjer Kusk Nielsen	f46172c25b	Update computerome.md ... Update with usage, heavily inspired by the UPPMAX docs	2021-09-13 08:16:11 +02:00
Marc Trunjer Kusk Nielsen	463df26c72	Merge branch 'nf-core:master' into computerome	2021-09-10 14:47:05 +02:00
theoportlock	b240142cc3	Adds rosalind configuration	2021-09-08 14:33:39 +02:00
Rogan Grant	54298ca0f7	Merge branch 'nf-core:master' into master	2021-09-04 15:37:03 -05:00
Marc Trunjer Kusk Nielsen	aad2486215	Create computerome.md	2021-08-31 14:10:19 +02:00
James Fellows Yates	59af7f0eee	Delete SHH profiles due to decommissioning	2021-08-20 10:15:39 +02:00
Rogan Grant	f793ffaace	Updated iGenomes location	2021-08-03 15:10:54 -05:00
Rogan Grant	079258ebbb	Minor text edits	2021-07-29 11:38:40 -05:00
Rogan Grant	482478878d	Added instructions for module loading	2021-07-28 18:11:10 -05:00
Rogan Grant	40170632aa	First draft of markdown file, with instructions for installing nextflow and getting access	2021-07-28 13:04:32 -05:00
Barry digby	ef6b13e377	tabs rm	2021-07-28 12:19:11 +01:00