millironx/nf-configs
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  • 8453f6b41a Moves qualimap arg to pipeline-specific config Emil 2022-05-30 12:58:12 +0200
  • 29fa08c434 Adds _JAVA_OPTIONS to singularity whitelist Emil 2022-05-30 11:07:24 +0200
  • 19497a4183 Makes qualimap fix work for most memory amounts Emil 2022-05-30 11:06:48 +0200
  • bb25c77e7c
         Update holo_globe Åshild J. Vågene 2022-05-20 17:01:30 +0200
  • d3e5c79fb4
         Create holo_globe Åshild J. Vågene 2022-05-20 15:44:20 +0200
  • 123706519e
         Merge pull request #377 from nvnieuwk/vsc_ugent Phil Ewels 2022-05-20 10:55:39 +0200
  • 15e03bcc7b
         Merge branch 'nf-core:master' into vsc_ugent nvnieuwk 2022-05-20 10:36:51 +0200
  • 867dcabd97 Fix type in VSC UGent Nicolas Vannieuwkerke 2022-05-20 10:36:07 +0200
  • 817f1a4aa7
         Merge pull request #376 from nvnieuwk/vsc_ugent nvnieuwk 2022-05-20 10:29:50 +0200
  • 8432e4d1dc typo Nicolas Vannieuwkerke 2022-05-20 09:49:42 +0200
  • fa39478a2d prettier Nicolas Vannieuwkerke 2022-05-20 09:49:04 +0200
  • c2b26a734d automated the internal cache dir location for singularity Nicolas Vannieuwkerke 2022-05-20 09:48:19 +0200
  • b2f7538b33
         Update docs/vsc_ugent.md nvnieuwk 2022-05-20 09:42:31 +0200
  • a3583262c2
         Update docs/vsc_ugent.md nvnieuwk 2022-05-20 09:41:02 +0200
  • dba85e53fa
         Update docs/vsc_ugent.md nvnieuwk 2022-05-20 09:40:55 +0200
  • d12fdfb40a added to the README Nicolas Vannieuwkerke 2022-05-20 09:37:55 +0200
  • 6fa8cd8a6d added the profile to the test yaml Nicolas Vannieuwkerke 2022-05-20 09:33:43 +0200
  • a2d77df2ee added default scratch location to markdown file Nicolas Vannieuwkerke 2022-05-20 09:32:14 +0200
  • 8621db3440 added the profile to nfcore_custom Nicolas Vannieuwkerke 2022-05-20 09:21:46 +0200
  • 2f74c91145 prettier Nicolas Vannieuwkerke 2022-05-20 09:18:33 +0200
  • cc86e6b270 Added the VSC UGent profile Nicolas Vannieuwkerke 2022-05-20 09:12:18 +0200
  • be9711731a
         Merge pull request #375 from nf-core/ifb_core-config-update Sarah Guinchard 2022-05-13 14:45:44 +0200
  • 44402cf28e
         Merge pull request #373 from genomic-medicine-sweden/taxprofiler_hasta Sofia Stamouli 2022-05-12 15:23:26 +0200
  • ca4cdcffee Fix typo sofstam 2022-05-12 15:07:30 +0200
  • b1deb0abce Update README.md sofstam 2022-05-12 14:56:52 +0200
  • 3538f8511a removed comment Sarah Guinchard 2022-05-12 11:02:42 +0200
  • 84457cc655 Update documentation Sarah Guinchard 2022-05-12 11:01:36 +0200
  • 54b3cda34d Add review suggestion sofstam 2022-05-12 11:00:26 +0200
  • 6bb7c1a422 Update config file with queue & correct ressources Sarah Guinchard 2022-05-12 10:55:00 +0200
  • c59149d64c Update docs for hasta config sofstam 2022-05-12 10:47:03 +0200
  • 4a50fd40e7
         Merge pull request #374 from jfy133/taxprofiler James A. Fellows Yates 2022-05-12 10:14:41 +0200
  • e1f780d976 Add taxprofiler for eVA James Fellows Yates 2022-05-12 07:54:17 +0100
  • 5bc6ed90bd Add hasta config for taxprofiler sofstam 2022-05-11 11:13:31 +0200
  • 65d07a3ead
         Merge pull request #372 from nf-core/TCLamnidis-patch-1 Thiseas C. Lamnidis 2022-05-06 15:53:03 +0200
  • d09f5fc116
         Update eva.config Thiseas C. Lamnidis 2022-05-06 15:12:04 +0200
  • 8fbfcfe256
         Merge pull request #371 from jfy133/master James A. Fellows Yates 2022-05-06 14:02:03 +0200
  • 95d18270e8
         Update eva.config James A. Fellows Yates 2022-05-06 13:57:11 +0200
  • e938f3606f Removes the new SGE clusterOptions for now Emil 2022-05-05 14:09:45 +0200
  • 15c938d05b
         Merge pull request #370 from drpatelh/google Harshil Patel 2022-05-05 11:22:36 +0100
  • 20c826fd50 Update retry strategy for preemptible instances on GCP Harshil Patel 2022-05-05 11:10:05 +0100
  • 8b9744723c Fixes hasta java memory issues Emil 2022-05-04 14:13:24 +0200
  • a543a3ebc6
         Merge pull request #369 from TCLamnidis/master Thiseas C. Lamnidis 2022-05-04 13:14:10 +0200
  • 209601f782
         missing bracket Thiseas C. Lamnidis 2022-05-04 13:08:13 +0200
  • c85342a9c9
         Merge pull request #368 from TCLamnidis/master James A. Fellows Yates 2022-05-04 12:32:04 +0200
  • a42c4344ad
         Exclude bionode 06 for software versions Thiseas C. Lamnidis 2022-05-03 18:30:42 +0200
  • 08edd19d67
         Merge pull request #1 from TCLamnidis/TCLamnidis-patch-1 Thiseas C. Lamnidis 2022-05-03 17:46:54 +0200
  • 79e227aa4e
         Update eva.config Thiseas C. Lamnidis 2022-05-03 16:42:21 +0200
  • 085726d081
         Update eva.config Thiseas C. Lamnidis 2022-05-03 16:36:05 +0200
  • 4592969613
         memory for get_software_versions in MB. Thiseas C. Lamnidis 2022-05-03 16:30:04 +0200
  • 79ad571319
         Update eva.config Thiseas C. Lamnidis 2022-05-03 16:25:48 +0200
  • 04226692fe
         Update eva.config Thiseas C. Lamnidis 2022-05-03 16:21:35 +0200
  • 57095fe79f
         Update eva.config Thiseas C. Lamnidis 2022-05-03 16:12:20 +0200
  • d1c1b467c1
         Merge pull request #366 from jfy133/master James A. Fellows Yates 2022-05-02 14:54:26 +0200
  • b5d9b79377
         Merge branch 'nf-core:master' into master James A. Fellows Yates 2022-05-02 13:59:18 +0200
  • bf658abc77
         Update eva.config James A. Fellows Yates 2022-05-02 13:59:13 +0200
  • 40c965c76b fix sentieon errors Ramprasad Neethiraj 2022-04-29 00:20:57 +0200
  • 4885b672b1 Prettier James Fellows Yates 2022-04-25 11:46:32 +0200
  • b2d6fb6f5e
         Merge pull request #365 from rajewski/master James A. Fellows Yates 2022-04-25 10:44:33 +0200
  • d261b3df78
         add cedars-sinai Alex Rajewski 2022-04-22 10:29:22 -0700
  • aa2c3e256b
         add cedars-sinai Alex Rajewski 2022-04-22 10:27:50 -0700
  • c60d73b565
         add Cedars-Sinai HPC Alex Rajewski 2022-04-22 10:26:32 -0700
  • 7d6482c652
         Merge pull request #1 from rajewski/patch-1 Alex Rajewski 2022-04-22 10:24:33 -0700
  • 766eb450be
         usage notes Alex Rajewski 2022-04-22 10:23:19 -0700
  • 69d1a14894
         basic Cedars-Sinai HPC config file Alex Rajewski 2022-04-22 10:17:13 -0700
  • c1425c6c01
         Merge pull request #364 from jfy133/eva-update James A. Fellows Yates 2022-04-22 11:47:10 +0200
  • 9da85209f2 change bcftools output format Ramprasad Neethiraj 2022-04-22 11:05:56 +0200
  • 447b3ee05d add beforescript for sentieon Ramprasad Neethiraj 2022-04-22 11:03:09 +0200
  • a086878c0b
         Update eva.config James A. Fellows Yates 2022-04-22 10:47:04 +0200
  • 3e3e2be04b remove duplicate entries Ramprasad Neethiraj 2022-04-22 00:09:29 +0200
  • d39bec05dc fix typo Ramprasad Neethiraj 2022-04-19 13:21:51 +0200
  • 32207a2402 update path so that the sentieon version is explicit Ramprasad Neethiraj 2022-04-19 11:42:05 +0200
  • 6fad232232 sentieon env variable Ramprasad Neethiraj 2022-04-19 11:27:35 +0200
  • afe935c2d0 include stub profile Ramprasad Neethiraj 2022-04-15 15:27:41 +0200
  • e9d93d62e0
         Merge pull request #362 from nf-core/praveenraj2018-patch-1 Maxime U. Garcia 2022-04-07 12:52:33 +0200
  • edaad1cd18
         Update: sentieon version Praveen Raj S 2022-04-07 12:36:01 +0200
  • d49b21efdc
         Merge pull request #361 from jfy133/master James A. Fellows Yates 2022-03-31 14:11:54 +0200
  • 44238471cf
         Update eva.config James A. Fellows Yates 2022-03-31 13:12:50 +0200
  • f172cce8b2
         Merge pull request #360 from jfy133/master James A. Fellows Yates 2022-03-31 12:58:06 +0200
  • 2277b541a3 Re-add bash bin specification James Fellows Yates 2022-03-31 11:06:53 +0200
  • 7cad02d327
         Merge pull request #359 from jfy133/fix-eva James A. Fellows Yates 2022-03-29 13:51:41 +0200
  • 8ad4ddac6a
         Merge branch 'master' into fix-eva James A. Fellows Yates 2022-03-29 12:50:54 +0200
  • 3d2a612b39 Remove setting of bash in clusterOotions James Fellows Yates 2022-03-29 12:48:37 +0200
  • 576351219a
         Update eva.config James A. Fellows Yates 2022-03-29 12:47:46 +0200
  • 9e502025b9
         Merge pull request #358 from aidaanva/master James A. Fellows Yates 2022-03-28 09:11:18 +0200
  • b0c9ac9be8
         Update eva.md James A. Fellows Yates 2022-03-28 09:02:26 +0200
  • 1f872aea87
         Merge pull request #357 from mahesh-panchal/uppmax-hostname-fix Phil Ewels 2022-03-25 15:31:09 +0100
  • 3a7f7f431e Execute sinfo with bash shell Mahesh Binzer-Panchal 2022-03-25 13:58:37 +0000
  • b9da0b4f00
         Update eva.config Aida Andrades Valtueña 2022-03-25 09:36:29 +0100
  • 7d72e8d94b
         Merge pull request #356 from b97pla/uppmax_miarka_config Phil Ewels 2022-03-24 14:33:06 +0100
  • 9a6cdfc21e removed process-specific requirements for sarek, request miarka high-mem node b97pla 2022-03-24 14:25:43 +0100
  • 80ec4485b6
         Merge pull request #355 from b97pla/uppmax_miarka_config Phil Ewels 2022-03-23 16:56:44 +0100
  • 5466d927f1 added requirements for uppmax cluster miarka b97pla 2022-03-23 15:29:40 +0100
  • 2c18f8c5da
         Merge pull request #354 from Emiller88/prettier Phil Ewels 2022-03-23 12:31:41 +0100
  • 590045be31
         ci: Run linting only once Edmund Miller 2022-03-21 19:18:55 -0500
  • ac6c08fbf4
         style: yaml => yml Edmund Miller 2022-03-18 05:22:34 -0500
  • c909b36a5e
         style: Allow editorconfig to manage tab widths Edmund Miller 2022-03-18 05:21:34 -0500
  • 6c37bf3b20
         style: Run prettier Edmund Miller 2022-03-17 18:33:31 -0500
  • 58da86d729
         ci: Use prettier Edmund Miller 2022-03-17 18:32:45 -0500
  • c42ab624c2
         style: Replace markdownlint with prettier Edmund Miller 2022-03-17 18:32:07 -0500
  • 962d86d604
         Merge pull request #346 from sagc-bioinformatics/sahmri James A. Fellows Yates 2022-03-18 13:01:36 +0100