ljmesi
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034352dbbf
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Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq
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2022-05-03 15:18:12 +02:00 |
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ljmesi
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5510ea39fe
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Test --no-name to solve inconsistent checksums
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2022-05-03 15:18:09 +02:00 |
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Lauri Mesilaakso
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a65e76e3dd
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 14:30:54 +03:00 |
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Chris Cheshire
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1baf143607
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Merge pull request #1548 from rpetit3/rp3-add-shigatyper
add module for shigatyper
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2022-05-03 12:21:43 +01:00 |
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Chris Cheshire
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829183ee84
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Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:16:54 +01:00 |
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Chris Cheshire
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b3ee6384e6
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Merge pull request #1604 from nf-core/add-slimfastq
feat: add module for slimfastq
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2022-05-03 12:16:41 +01:00 |
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Chris Cheshire
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6015478b72
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Merge branch 'master' into add-slimfastq
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2022-05-03 12:11:19 +01:00 |
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Chris Cheshire
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d7fb969a74
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Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:10:23 +01:00 |
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Lauri Mesilaakso
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6367c6a1ad
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:41:25 +03:00 |
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James A. Fellows Yates
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b61cdc7355
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Merge pull request #1570 from nvnieuwk/vardict-java
new_module:vardict-java
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2022-05-03 10:26:41 +02:00 |
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nvnieuwk
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f85787b19e
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Merge branch 'master' into vardict-java
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2022-05-03 10:17:04 +02:00 |
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nvnieuwk
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8187641280
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:45 +02:00 |
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nvnieuwk
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11c6faf433
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:36 +02:00 |
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nvnieuwk
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01085b3e09
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:30 +02:00 |
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nvnieuwk
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1609dfc96d
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:20 +02:00 |
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nvnieuwk
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3cdbdf50fc
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:14 +02:00 |
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nvnieuwk
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2dff193b54
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:15:59 +02:00 |
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nvnieuwk
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7c89af359c
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:15:51 +02:00 |
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Nicolas Vannieuwkerke
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49ba3adbde
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Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 10:15:33 +02:00 |
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Nicolas Vannieuwkerke
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d33253513f
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put the version on top of the file
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2022-05-03 10:15:30 +02:00 |
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Lauri Mesilaakso
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773e6f8e93
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:13:55 +03:00 |
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Lucpen
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3891eca3c3
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Merge pull request #1596 from nf-core/adding_stub_to_modules
feat added stub to modules gatk4_mergebamalignment_mutect2_revertsam_samtofastq, samtools_view
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2022-05-03 10:13:25 +02:00 |
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nvnieuwk
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278d41b6bf
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Merge branch 'master' into vardict-java
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2022-05-03 09:59:05 +02:00 |
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ljmesi
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59d6e6e1dd
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Add updated md5sums
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2022-05-03 09:56:50 +02:00 |
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ljmesi
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5503903457
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Add compression for output fastq file
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2022-05-03 09:46:04 +02:00 |
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Ramprasad Neethiraj
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6f787aea71
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Merge branch 'master' into adding_stub_to_modules
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2022-05-03 09:43:16 +02:00 |
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Lauri Mesilaakso
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218400b632
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Merge pull request #1600 from Genomic-Medicine-Linkoping/add_handling_of_alternative_fn_suffix_for_metaphlan3
Add additional handling of fq.gz file name suffix
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2022-05-03 09:50:09 +03:00 |
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Lauri Mesilaakso
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77054795fb
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Merge branch 'master' into add_handling_of_alternative_fn_suffix_for_metaphlan3
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2022-05-03 09:38:51 +03:00 |
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Nicolas Vannieuwkerke
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71c5d21374
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ran prettier
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2022-05-03 08:34:12 +02:00 |
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Nicolas Vannieuwkerke
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9127f92ddd
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Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 08:29:50 +02:00 |
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Nicolas Vannieuwkerke
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9a10e5beb5
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Added the missing inputs in meta.yml + correct notation
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2022-05-03 08:29:46 +02:00 |
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Matthias De Smet
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1687bfcb85
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Merge branch 'master' into add-slimfastq
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2022-05-03 08:22:49 +02:00 |
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Matthias De Smet
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a67c06af81
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Merge branch 'master' into vardict-java
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2022-05-03 08:22:19 +02:00 |
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Nicolas Vannieuwkerke
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d8782d7976
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Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 08:20:13 +02:00 |
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Nicolas Vannieuwkerke
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b8a59c2b17
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Fixed version annotation
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2022-05-03 08:20:10 +02:00 |
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Sateesh Peri
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88a9a55c80
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Merge pull request #1574 from jvhagey/srst2/srst2
new module: srst2/srst2
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2022-05-02 20:21:23 -04:00 |
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Jill V. Hagey, PhD
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23cfb5dd42
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Update test.yml
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2022-05-02 18:38:48 -04:00 |
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Jill V. Hagey, PhD
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db9681029c
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Update test.yml
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2022-05-02 18:27:01 -04:00 |
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Jill V. Hagey, PhD
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7b0d6f96fd
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Update test.yml
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2022-05-02 18:20:54 -04:00 |
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Jill V. Hagey, PhD
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e5d7c80bb5
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Update test.yml
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2022-05-02 18:13:14 -04:00 |
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Moritz E. Beber
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16aa3915e3
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feat: add module for slimfastq
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2022-05-02 23:16:59 +02:00 |
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Ramprasad Neethiraj
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3194729f82
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Merge branch 'master' into adding_stub_to_modules
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2022-05-02 18:31:55 +02:00 |
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Jill V. Hagey, PhD
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99a8711997
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Update tests/modules/srst2/srst2/test.yml
Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>
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2022-05-02 12:26:56 -04:00 |
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Sateesh Peri
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c56b371713
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Merge branch 'master' into srst2/srst2
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2022-05-02 12:13:11 -04:00 |
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jvhagey
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cd45dc1550
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linting test.yml
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2022-05-02 11:38:39 -04:00 |
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Jasmin F
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f70cfbe1d7
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Merge pull request #1581 from jasmezz/antismash_db_output
Antismash db output
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2022-05-02 17:37:01 +02:00 |
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jvhagey
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24dc2d2113
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added tests
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2022-05-02 11:30:19 -04:00 |
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Jasmin F
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235944f797
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Merge branch 'master' into antismash_db_output
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2022-05-02 17:11:51 +02:00 |
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Jasmin F
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8db0b754c0
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Fix commented-out command
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2022-05-02 16:56:39 +02:00 |
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jasmezz
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6a9f2077cf
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Fix unbound variable crash
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2022-05-02 16:41:59 +02:00 |
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