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Author	SHA1	Message	Date
Moritz E. Beber	16aa3915e3	feat: add module for slimfastq	2022-05-02 23:16:59 +02:00
Jasmin F	f70cfbe1d7	Merge pull request #1581 from jasmezz/antismash_db_output ... Antismash db output	2022-05-02 17:37:01 +02:00
Jasmin F	235944f797	Merge branch 'master' into antismash_db_output	2022-05-02 17:11:51 +02:00
Jasmin F	8db0b754c0	Fix commented-out command	2022-05-02 16:56:39 +02:00
jasmezz	6a9f2077cf	Fix unbound variable crash	2022-05-02 16:41:59 +02:00
jasmezz	0fc352188b	Fix conda antismash path	2022-05-02 14:40:35 +02:00
Jasmin F	5cd517e759	Apply suggestions from code review ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-02 14:31:40 +02:00
James A. Fellows Yates	92efb83ec8	Merge pull request #1595 from jfy133/diamond-update ... Standardise DIAMOND output channels and md5sum	2022-05-02 13:43:56 +02:00
James A. Fellows Yates	f1c2f624eb	Update tests/modules/diamond/blastx/main.nf ... Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>	2022-05-02 13:17:22 +02:00
James A. Fellows Yates	575258332a	Merge branch 'master' into diamond-update	2022-05-02 12:41:37 +02:00
James Fellows Yates	bd3bfe0817	Add warn of default being used	2022-05-02 12:41:24 +02:00
James Fellows Yates	67b074382e	Fix tests	2022-05-02 12:29:00 +02:00
James Fellows Yates	58e5c6aece	Make variables consistent	2022-05-02 11:55:43 +02:00
Maxime U. Garcia	0b01607659	Merge pull request #1597 from praveenraj2018/optional_bai_MarkDup ... Changed BAI as optional output	2022-05-02 11:46:19 +02:00
James Fellows Yates	375b706a4f	Merge branch 'diamond-update' of github.com:jfy133/nf-core-modules into diamond-update	2022-05-02 11:39:09 +02:00
James Fellows Yates	6986975bc0	Fix output channels allow BLAST table customisation	2022-05-02 11:39:07 +02:00
Praveen	0511e7fbbf	Changed BAI as optional output to handle large genome	2022-05-02 11:35:15 +02:00
James A. Fellows Yates	ebd3cebee5	Merge branch 'master' into diamond-update	2022-05-02 09:37:46 +02:00
James Fellows Yates	996385fb0f	Remove MD5sumfor DIAMOND DAA file due to occasioanlly variability	2022-05-02 09:36:34 +02:00
Harshil Patel	76ac37c529	Merge pull request #1592 from jfy133/diamond-update ... Bump DIAMOND modules to 2.0.15	2022-04-29 20:11:26 +01:00
James Fellows Yates	44ed38beb8	Merge branch 'diamond-update' of github.com:jfy133/nf-core-modules into diamond-update	2022-04-29 21:06:09 +02:00
James Fellows Yates	39530b5ca7	Bump DIAMOND version to 2.0.15	2022-04-29 21:05:12 +02:00
Matthias De Smet	a9e8dbbdec	Merge pull request #1535 from matthdsm/tool/bamtools-split	2022-04-29 18:43:44 +02:00
Harshil Patel	4df985a065	Merge branch 'master' into tool/bamtools-split	2022-04-29 16:38:59 +01:00
Edmund Miller	0d8acda00c	Use issue forms	2022-04-29 14:35:29 +00:00
Edmund Miller	a8a4d76a65	chore: Add container version ... Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>	2022-04-29 14:34:20 +00:00
Edmund Miller	fb02d6e85f	chore: add OS version to bug report ... Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>	2022-04-29 14:34:20 +00:00
Edmund Miller	8bee7d4748	chore: Add image tag to bug report ... Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>	2022-04-29 14:34:20 +00:00
Edmund Miller	ef0483586a	chore: Use forms for feature request	2022-04-29 14:34:20 +00:00
Edmund Miller	816803dbe9	chore: Add checkboxes for bug report	2022-04-29 14:34:20 +00:00
Edmund Miller	2da712f6f3	chore: Use forms for new modules	2022-04-29 14:34:20 +00:00
Edmund Miller	cb29ae2187	chore: Use forms for bug report	2022-04-29 14:34:20 +00:00
Matthias De Smet	86484f3361	Merge pull request #1534 from matthdsm/tool/elprep-merge ... Tool/elprep merge	2022-04-29 15:18:45 +02:00
James A. Fellows Yates	23c42e9b76	Merge branch 'master' into tool/elprep-merge	2022-04-29 15:11:09 +02:00
James A. Fellows Yates	fa8edd917f	Merge pull request #1587 from jfy133/diamond-update ... Update DIAMOND/blast* to support all output formats	2022-04-29 15:08:18 +02:00
Matthias De Smet	9d0f03d96a	Update modules/elprep/merge/main.nf ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-04-29 15:07:09 +02:00
Matthias De Smet	7de207f93f	Merge branch 'master' into diamond-update	2022-04-29 15:02:54 +02:00
Matthias De Smet	bdbf629d93	Merge branch 'master' into tool/bamtools-split	2022-04-29 14:33:28 +02:00
Matthias De Smet	edadc9d216	Merge branch 'master' into tool/elprep-merge	2022-04-29 14:32:12 +02:00
Matthias De Smet	0ec3dea37f	Merge pull request #1541 from matthdsm/subwf/bam_qc ... New subworkflow: bam_qc_picard	2022-04-29 14:31:38 +02:00
Matthias De Smet	7e391c3a3b	Update subworkflows/nf-core/bam_qc_picard/main.nf ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-04-29 14:26:06 +02:00
Matthias De Smet	343c0ebe20	Update subworkflows/nf-core/bam_qc_picard/main.nf ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-04-29 14:26:00 +02:00
Matthias De Smet	20e3767657	Update subworkflows/nf-core/bam_qc_picard/main.nf ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-04-29 14:24:25 +02:00
Matthias De Smet	71ccf0e207	Update subworkflows/nf-core/bam_qc_picard/main.nf ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-04-29 14:24:19 +02:00
Matthias De Smet	73600b0339	Update subworkflows/nf-core/bam_qc_picard/main.nf ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-04-29 14:20:15 +02:00
Matthias De Smet	3997d28a77	Merge branch 'master' into subwf/bam_qc	2022-04-29 11:39:18 +02:00
Matthias De Smet	c55032d10e	Merge pull request #1584 from matthdsm/bump/picard ... bump picard version across the board	2022-04-29 11:38:21 +02:00
Matthias De Smet	771d5a19f1	fix reference arg	2022-04-29 11:12:24 +02:00
Matthias De Smet	20ebb89ff9	update to long args	2022-04-29 10:52:40 +02:00
James A. Fellows Yates	983d61763d	Merge branch 'master' into diamond-update	2022-04-29 10:28:38 +02:00