SusiJo
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ea526051a4
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new test.yml
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2022-05-31 14:35:42 +02:00 |
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SusiJo
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3117b2973c
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added test for metrics
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2022-05-31 14:35:29 +02:00 |
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SusiJo
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e0e8273f74
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adjusted input to use queryname sorted bams
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2022-05-31 14:35:18 +02:00 |
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SusiJo
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39e34418c9
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added metrics as optional output
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2022-05-31 14:34:50 +02:00 |
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James A. Fellows Yates
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667a0bc24c
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Merge pull request #1708 from sguizard/bamtools/convert/remove_TODO
👌 IMPROVE: Remove last TODO
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2022-05-31 13:41:41 +02:00 |
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James Fellows Yates
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723852bf3d
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Fixes running without shortreads, and also ensures all tests produce non-empty fastq.gz files
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2022-05-31 13:38:18 +02:00 |
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James Fellows Yates
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7ffe98ac8b
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Add gatk/indelrealigner
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2022-05-30 21:12:21 +02:00 |
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Sébastien Guizard
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a3ae526521
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Merge branch 'master' into bamtools/convert/remove_TODO
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2022-05-30 17:36:36 +01:00 |
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Sebastien Guizard
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d463cd5dd6
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👌 IMPROVE: Remove last TODO
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2022-05-30 17:26:51 +01:00 |
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Jeanette Tångrot
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3bb32b2def
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Merge pull request #1705 from jtangrot/vsearch_usearch_global
Vsearch usearch global
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2022-05-30 14:28:01 +02:00 |
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jtangrot
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6ae405c5da
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prettier
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2022-05-30 13:35:12 +02:00 |
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jtangrot
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6aac5c2c40
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Update test
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2022-05-30 13:30:27 +02:00 |
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jtangrot
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5f0d75bb37
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Merge branch 'vsearch_usearch_global' of https://github.com/jtangrot/nf-core_modules into vsearch_usearch_global
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2022-05-30 13:05:00 +02:00 |
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Jeanette Tångrot
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69e00b55d3
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Update modules/vsearch/usearchglobal/main.nf
Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com>
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2022-05-30 13:03:45 +02:00 |
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jtangrot
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c67c15f243
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Make input tuple
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2022-05-30 13:01:06 +02:00 |
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Matthias De Smet
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63db63757c
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bump picard versions
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2022-05-30 10:15:40 +02:00 |
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jtangrot
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2e16c90fce
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Fix whitespace
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2022-05-30 09:57:05 +02:00 |
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jtangrot
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5132b004c7
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Merge branch 'vsearch_usearch_global' of https://github.com/jtangrot/nf-core_modules into vsearch_usearch_global
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2022-05-30 08:55:33 +02:00 |
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jtangrot
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01d86439f5
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Add idcutoff as input
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2022-05-30 08:50:27 +02:00 |
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jtangrot
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589ce2d73a
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Add options for output file type
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2022-05-30 08:50:27 +02:00 |
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jtangrot
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1c99ffd876
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Add vserach usearch_global
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2022-05-30 08:50:27 +02:00 |
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Harshil Patel
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b86d792055
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Merge pull request #1703 from drpatelh/star
Bump container version for STAR to 2.7.10a
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2022-05-27 12:29:59 +01:00 |
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Harshil Patel
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ad578cafcc
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Fix tests
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2022-05-27 12:14:10 +01:00 |
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Harshil Patel
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fb6c7bca3d
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Bump container version for STAR to 2.7.10a
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2022-05-27 11:35:04 +01:00 |
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jtangrot
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05e4e2cdde
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Add idcutoff as input
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2022-05-26 20:16:45 +02:00 |
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Sateesh Peri
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ead3679829
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Merge branch 'master' into rp3-add-snippy
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2022-05-26 03:04:19 -04:00 |
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Harshil Patel
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f89b76afa4
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Merge pull request #1701 from matthdsm/update/mosdepth
Mosdepth: add all remaining outputs
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2022-05-25 19:46:37 +01:00 |
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Harshil Patel
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72a31b76eb
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Update main.nf
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2022-05-25 19:42:15 +01:00 |
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Harshil Patel
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241a1de035
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Update main.nf
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2022-05-25 19:38:12 +01:00 |
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Matthias De Smet
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bc7002b0c9
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Merge branch 'master' into update/mosdepth
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2022-05-25 19:20:45 +02:00 |
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Matthias De Smet
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72ff2732e3
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add all remaining outputs to mosdepth
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2022-05-25 19:19:39 +02:00 |
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Mahesh Binzer-Panchal
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038fced07e
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Merge pull request #1698 from mahesh-panchal/mash_screen_patch
Patch mash screen
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2022-05-25 17:00:01 +02:00 |
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Mahesh Binzer-Panchal
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3d532405a5
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Merge branch 'master' into mash_screen_patch
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2022-05-25 16:51:42 +02:00 |
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SusiJo
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b34e5ea6bf
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rm unnecessary spark_user
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2022-05-25 16:38:48 +02:00 |
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SusiJo
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1400f2e683
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fixed tests - mixed chr21 + chr22
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2022-05-25 16:38:30 +02:00 |
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SusiJo
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dd6d838cd7
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override userEmulation
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2022-05-25 16:37:44 +02:00 |
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Robert A. Petit III
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c50e097cd1
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Merge pull request #1696 from jvhagey/gamma-update
adding upzip to gamma/gamma
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2022-05-25 10:06:03 -04:00 |
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Mahesh Binzer-Panchal
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c452f56289
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Patch mash screen
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2022-05-25 12:29:14 +00:00 |
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jasmezz
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77b5986463
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Create ampir module
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2022-05-25 13:27:10 +02:00 |
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Jill V. Hagey, PhD
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b1dd1d8a52
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Merge branch 'nf-core:master' into gamma-update
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2022-05-24 19:28:06 -04:00 |
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jvhagey
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127665d27b
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fixed test.yml
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2022-05-24 19:27:09 -04:00 |
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jvhagey
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bb999395aa
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fixed pytest_modules.yml
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2022-05-24 19:19:38 -04:00 |
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Mahesh Binzer-Panchal
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de74c0a83b
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Merge pull request #1620 from mahesh-panchal/kat_hist
Add module kat hist
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2022-05-25 00:23:38 +02:00 |
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Mahesh Binzer-Panchal
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3d51956b88
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Merge branch 'master' into kat_hist
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2022-05-24 23:10:13 +02:00 |
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Ramprasad Neethiraj
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00db06eb9e
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Merge pull request #1685 from genomic-medicine-sweden/rhocall
add bcftools/roh
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2022-05-24 22:39:32 +02:00 |
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jvhagey
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b8aaea7429
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updating paths in test.yml
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2022-05-24 16:27:00 -04:00 |
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jvhagey
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f1fc7fc38e
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adding upzip
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2022-05-24 15:15:07 -04:00 |
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Ramprasad Neethiraj
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fe90615f57
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Merge branch 'rhocall' of github.com:genomic-medicine-sweden/modules into rhocall
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2022-05-24 16:17:59 +02:00 |
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Ramprasad Neethiraj
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b0dba3ee75
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update description
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2022-05-24 16:17:15 +02:00 |
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Ramprasad Neethiraj
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c91947f8a1
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Merge branch 'master' into rhocall
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2022-05-24 16:07:55 +02:00 |
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