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Author	SHA1	Message	Date
drpatelh	63a2cce2da	Add include section	2020-08-06 13:23:56 +01:00
drpatelh	7b3bc338d4	Add info about GitHub API	2020-08-06 13:04:23 +01:00
drpatelh	154d2b0c08	Add separate bullet	2020-08-06 12:57:53 +01:00
drpatelh	4f82982d04	Truncate console text	2020-08-06 12:55:36 +01:00
drpatelh	9bd5596732	Add citation to TOC	2020-08-06 12:52:55 +01:00
drpatelh	680c58315a	Add citation	2020-08-06 12:52:04 +01:00
drpatelh	9c8d3af66e	Add direct Slack link	2020-08-06 12:46:36 +01:00
drpatelh	3e0c63a0a0	Update badge	2020-08-06 12:42:45 +01:00
drpatelh	3428157910	Add badges	2020-08-06 12:39:33 +01:00
drpatelh	d510854648	Add note about other commands	2020-08-06 12:27:01 +01:00
drpatelh	9142ad7016	Move terminology to bottom	2020-08-06 12:17:24 +01:00
drpatelh	c2f797d820	Update existing pipeline usage	2020-08-06 12:12:40 +01:00
drpatelh	2c9cd2d89b	Update main script	2020-08-06 12:00:38 +01:00
drpatelh	83b61fcccd	Update README	2020-08-06 12:00:24 +01:00
drpatelh	530b4c1bd9	Add test directory	2020-08-06 11:32:38 +01:00
drpatelh	b7d0ee043e	Initial commit	2020-08-06 11:32:18 +01:00
drpatelh	f021ab119b	Initial commit	2020-08-06 11:32:11 +01:00
drpatelh	ab512be9aa	Initial commit	2020-08-06 11:31:52 +01:00
Harshil Patel	d286fdf995	Merge pull request #54 from drpatelh/master ... Hard copy functions.nf	2020-08-05 18:39:53 +01:00
drpatelh	f315a7b3c4	Hard copy files	2020-08-05 18:38:27 +01:00
Harshil Patel	1073ea47fa	Merge pull request #53 from drpatelh/master ... Add in chipseq modules	2020-08-05 17:46:59 +01:00
drpatelh	71a6a9decc	Fix markdownlint	2020-08-05 17:46:23 +01:00
drpatelh	9988dacfc6	Fix yaml lint	2020-08-05 17:32:47 +01:00
drpatelh	ab8a9025a0	Copy across test data and docs for trimgalore	2020-08-05 17:28:25 +01:00
drpatelh	50fce8b3cf	Copy across test data and docs for samtools sort	2020-08-05 17:28:09 +01:00
drpatelh	de9d33da12	Copy across test data and docs for samtools index	2020-08-05 17:27:58 +01:00
drpatelh	fb697eca2f	Copy across test data and docs for bwa mem	2020-08-05 17:27:42 +01:00
drpatelh	da4dcee934	Copy across test data and docs for bwa index	2020-08-05 17:27:28 +01:00
drpatelh	4f590ff239	Remove some more modules	2020-08-05 17:25:34 +01:00
drpatelh	1edc58a36b	Pinch docs and delete redundant modules	2020-08-05 17:24:40 +01:00
drpatelh	5d224740cd	Change path	2020-08-05 17:17:58 +01:00
drpatelh	137db462a7	Add samtools	2020-08-05 17:17:47 +01:00
drpatelh	993d0d5743	Add picard	2020-08-05 17:17:41 +01:00
drpatelh	9d168cf29e	Add deeptools	2020-08-05 17:17:34 +01:00
drpatelh	f481899049	Add subread	2020-08-05 17:17:19 +01:00
drpatelh	20e6d847a3	Add trimgalore	2020-08-05 17:17:12 +01:00
drpatelh	c5bb9c2fde	Add macs2	2020-08-05 17:17:05 +01:00
drpatelh	f61ad7506a	Add homer	2020-08-05 17:16:56 +01:00
drpatelh	71d7aecf74	Add preseq	2020-08-05 17:16:45 +01:00
drpatelh	e94676a2b2	Add phantompeakqualtools	2020-08-05 17:16:34 +01:00
drpatelh	6fe4ec16df	Add ucsc	2020-08-05 17:16:23 +01:00
drpatelh	3b1669c317	Add bwa mem	2020-08-05 17:16:08 +01:00
drpatelh	7938a60a02	Add bwa index	2020-08-05 17:15:56 +01:00
drpatelh	7f5ca56413	Soft-link functions to top-level module dir	2020-08-05 17:03:04 +01:00
Harshil Patel	7f13463d0b	Merge pull request #52 from drpatelh/master ... Why isn't GitHub API refreshing with these changes?!	2020-08-05 16:36:25 +01:00
drpatelh	4a65c77e58	deprecated/trim_galore/Dockerfile	2020-08-05 16:34:07 +01:00
drpatelh	3ec4f63fd8	Use correct link to fastqc	2020-08-05 16:28:42 +01:00
Harshil Patel	2b6a68260b	Merge pull request #51 from drpatelh/master ... Test latest FastQC implementation	2020-08-05 16:10:41 +01:00
drpatelh	c08e6959a5	Reorganise everything	2020-08-05 16:09:25 +01:00
Harshil Patel	88eac382be	Merge pull request #41 from MaxUlysse/bwa-mem2 ... add module for bwa-mem2 index	2020-08-05 15:45:43 +01:00