Kevin Menden
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9885da628e
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Update software/quast/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:03:22 +01:00 |
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Kevin Menden
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c807c6c438
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Update software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:03:15 +01:00 |
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Kevin Menden
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d88bf3bdda
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Update software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:03:06 +01:00 |
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Kevin Menden
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c43fe85a0c
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Update software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-01 14:02:57 +01:00 |
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kevinmenden
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a342296d70
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fixed test md5s
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2021-02-01 13:36:25 +01:00 |
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kevinmenden
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b5298f94d8
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refactored quast module
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2021-02-01 13:13:21 +01:00 |
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kevinmenden
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956bf22a58
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fixed bug; updated meta.yml
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2021-02-01 07:44:26 +01:00 |
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kevinmenden
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34cfc32c29
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added quast workflow
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2021-01-29 16:15:45 +01:00 |
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kevinmenden
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e8bd730164
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added quast tests
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2021-01-29 16:14:33 +01:00 |
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kevinmenden
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10bb80743a
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started adding quast modules
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2021-01-29 16:06:14 +01:00 |
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Harshil Patel
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29ce4e670f
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Merge pull request #124 from KevinMenden/pangolin-module
Added pangolin module
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2021-01-29 11:58:54 +00:00 |
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kevinmenden
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d30994c6ef
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Merge branch 'pangolin-module' of https://github.com/KevinMenden/modules into pangolin-module
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2021-01-29 12:54:38 +01:00 |
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kevinmenden
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bacebdfb47
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added pangolin workf
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2021-01-29 12:53:51 +01:00 |
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kevinmenden
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44df90a795
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Merge branch 'master' of https://github.com/nf-core/modules into pangolin-module
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2021-01-29 12:50:24 +01:00 |
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Harshil Patel
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5da41ecb26
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Merge pull request #122 from KevinMenden/master
Added tests and meta.yml files for Salmon
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2021-01-29 11:49:03 +00:00 |
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Harshil Patel
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adfb38aa62
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Merge pull request #123 from KevinMenden/cutadapt-module
Added cutadapt module
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2021-01-29 11:47:21 +00:00 |
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kevinmenden
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4e48b416b9
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Merge branch 'master' of https://github.com/KevinMenden/modules
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2021-01-29 12:45:38 +01:00 |
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kevinmenden
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9156becd19
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changed 'covid' to 'sarscov2'
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2021-01-29 12:45:21 +01:00 |
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Harshil Patel
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59e3e8202b
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Update software/pangolin/main.nf
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2021-01-29 11:43:42 +00:00 |
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Kevin Menden
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afaef3c30d
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 12:40:15 +01:00 |
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kevinmenden
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a22f430674
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updated input description
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2021-01-29 12:34:23 +01:00 |
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Kevin Menden
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8f2f936cd4
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 12:33:37 +01:00 |
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kevinmenden
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14ade8060f
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added preliminary pangolin test
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2021-01-29 11:12:22 +01:00 |
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kevinmenden
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69a41cadbc
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added pangolin module
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2021-01-29 11:03:54 +01:00 |
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kevinmenden
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d91cd73e52
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added test workflow
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2021-01-29 09:41:24 +01:00 |
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kevinmenden
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0780155dc4
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added cutadapt module and tests
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2021-01-29 09:33:45 +01:00 |
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kevinmenden
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3390f7621d
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removed should_exist tag
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2021-01-27 16:32:04 +01:00 |
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kevinmenden
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48c570d6ac
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added file exist to test.yml
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2021-01-27 08:56:25 +01:00 |
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kevinmenden
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3750bea2dd
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fixed typo
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2021-01-26 16:18:46 +01:00 |
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kevinmenden
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a3185732ff
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added meta.yml files
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2021-01-26 16:12:41 +01:00 |
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kevinmenden
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431a2eb73b
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added quant test workflow
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2021-01-26 15:58:22 +01:00 |
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kevinmenden
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915e0574a2
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added salmon index test workflow
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2021-01-26 15:44:22 +01:00 |
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kevinmenden
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81bcf0da82
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added test.yml and md5sums
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2021-01-26 15:38:56 +01:00 |
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kevinmenden
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8d4b71355e
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added test data and salmon tests
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2021-01-26 15:24:06 +01:00 |
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Harshil Patel
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3ef16b7cfd
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Merge pull request #121 from KevinMenden/master
Adding test for STAR
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2021-01-26 13:01:27 +00:00 |
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kevinmenden
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84355f674d
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added optional output files
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2021-01-26 13:31:30 +01:00 |
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Kevin Menden
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8e2749beb7
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-26 12:46:30 +01:00 |
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kevinmenden
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5be1598b29
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remove log.progress.out from test
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2021-01-25 15:21:48 +01:00 |
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kevinmenden
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272de7c021
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Added meta.yml files for align and genomegenerate
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2021-01-25 15:14:57 +01:00 |
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kevinmenden
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046444a736
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added workflow files
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2021-01-25 15:00:51 +01:00 |
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kevinmenden
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a1e1e27f67
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updated test md5sums
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2021-01-25 15:00:18 +01:00 |
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kevinmenden
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71e0de733c
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adapdted star for mutliple output BAMs
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2021-01-25 14:09:03 +01:00 |
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kevinmenden
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6444af7b36
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star module tests
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2021-01-25 09:02:03 +01:00 |
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kevinmenden
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f58c1c1e9e
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added star genomegenerate test
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2021-01-22 14:01:59 +01:00 |
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Edmund Miller
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daa25b9329
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Merge branch 'preseq_test'
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2021-01-15 17:41:13 -06:00 |
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Edmund Miller
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86850dc8a4
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style: Remove old comment
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 10:32:20 -06:00 |
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Edmund Miller
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4f0c34bbfb
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ci: Bump nextflow version
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 10:32:20 -06:00 |
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sruthipsuresh
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7729fee5a9
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Added gffread and gff3 file for testing
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2021-01-15 10:32:20 -06:00 |
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Edmund Miller
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d7a78fa127
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style: Fix indent
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 10:28:11 -06:00 |
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sruthipsuresh
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b95bd37780
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Added ucsc module
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2021-01-15 10:28:11 -06:00 |
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