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Author SHA1 Message Date
Harshil Patel
27dbe8b52a
Merge pull request #115 from Functional-Genomics-Lab/stringtie_test 
Added testing for Stringtie
 2021-01-15 16:09:39 +00:00
Edmund Miller
53830e05c7
test: Fix typo 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2021-01-15 10:07:44 -06:00
Edmund Miller
fe39c7822f
style: Fix indentation 2021-01-15 10:01:02 -06:00
Edmund Miller
b9e8f959b3
style: Standardize process names 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2021-01-15 10:00:40 -06:00
Edmund Miller
a3ca757f4e Update .github/workflows/phantompeakqualtools.yml 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2021-01-15 09:38:13 -06:00
sruthipsuresh
ec91171152 Corrected naming to ensure test checks work 2021-01-15 09:38:13 -06:00
sruthipsuresh
5a1c1f90e5 removed md5sums for pdf, rdata 2021-01-15 09:38:13 -06:00
sruthipsuresh
3f814d1e2f Workflow and md5sums added 2021-01-15 09:38:13 -06:00
sruthipsuresh
269d9888fe Corrected bash error, tested process 2021-01-15 09:38:13 -06:00
Sruthi Suresh
b7435b0159 added test file for phantompeakqualtools for testing 2021-01-15 09:38:13 -06:00
sruthipsuresh
09d56efe12 Fixed with mr file for size issues 2021-01-14 02:12:57 -06:00
sruthipsuresh
00ef1d3863
Changed input to bed files 2021-01-15 16:52:17 -06:00
Edmund Miller
4181a7356c
Remove -bam flag 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2021-01-15 09:39:32 -06:00
sruthipsuresh
2d2f15af0f
Delete phantompeakqualtools.yml 2021-01-13 21:23:24 -06:00
sruthipsuresh
a66618be98
Delete tests/software/phantompeakqualtools directory 2021-01-13 21:23:02 -06:00
sruthipsuresh
6f3cbfcd9a Fixed test.yml 2021-01-12 18:14:28 -06:00
sruthipsuresh
b297f7aea1 Fixed test and removed phantompeak tests 2021-01-12 18:04:12 -06:00
sruthipsuresh
7c88cf4f67 Finished module with md5sums 2021-01-12 09:29:31 -06:00
sruthipsuresh
0a04c96357 Added module, TODO data 2021-01-12 09:13:37 -06:00
sruthipsuresh
3b581d1912 Updated test.yml 2021-01-12 08:56:11 -06:00
sruthipsuresh
a2faeb703f Fixed md5sums 2021-01-12 08:50:20 -06:00
sruthipsuresh
cb39fcb915 Added preseq module and workflow 2021-01-12 08:41:09 -06:00
sruthipsuresh
a812dceb23 Updated bam input in module 2021-01-12 08:32:29 -06:00
sruthipsuresh
e1a3d1b18a Corrected naming to ensure test checks work 2020-12-21 19:53:03 -06:00
sruthipsuresh
5319eabbc5 removed md5sums for pdf, rdata 2020-12-19 06:09:04 -06:00
sruthipsuresh
522b896534 Workflow and md5sums added 2020-12-19 06:09:04 -06:00
sruthipsuresh
8c088d473b Corrected bash error, tested process 2020-12-19 06:09:04 -06:00
Sruthi Suresh
10d0058a1a added test file for phantompeakqualtools for testing 2020-12-19 06:09:04 -06:00
Harshil Patel
c98f9284a2
Merge pull request #89 from KevinMenden/master 
Add bowtie module
 2020-12-18 14:56:29 +00:00
kevinmenden
8f75bac67e update test.bam md5sums 2020-12-18 11:16:58 +01:00
kevinmenden
32f6191ff3 editorconfig 2020-12-18 11:11:19 +01:00
kevinmenden
db0b631906 removed index from test output 2020-12-18 11:06:02 +01:00
kevinmenden
299a3fa07e adding .index back 2020-12-18 10:58:37 +01:00
kevinmenden
0be13edc52 next try at editorconfig 2020-12-18 09:52:38 +01:00
kevinmenden
07f0a2476a fixed linting errors 2020-12-18 09:50:05 +01:00
kevinmenden
0eb20c14bf fixed unaligned output 2020-12-18 09:20:35 +01:00
kevinmenden
1c89c9717b Merge branch 'master' of https://github.com/KevinMenden/modules 2020-12-18 09:16:17 +01:00
kevinmenden
f840325ead added unaligned output 2020-12-18 09:14:40 +01:00
Kevin Menden
7805d25cc5
Update software/bowtie/align/meta.yml 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-12-18 09:13:48 +01:00
Kevin Menden
a7f1ff29d7
Update software/bowtie/align/meta.yml 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-12-18 09:13:42 +01:00
Kevin Menden
dc4108fd9b
Update software/bowtie/align/meta.yml 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-12-18 09:13:35 +01:00
Kevin Menden
41329b8982
Apply suggestions from code review 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-12-18 08:16:18 +01:00
Harshil Patel
0305d873f4
Merge pull request #81 from nf-core/ec-ci 
Apply editorconfig and enable CI again
 2020-12-18 00:46:44 +00:00
Edmund Miller
d76638d6f8
style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
Edmund Miller
eb61638501
ci: Use verbose name for editorconfig-check 
I was getting confused myself with eclint
 2020-12-17 17:48:19 -06:00
Edmund Miller
c6cf653f25
ci(#77): Ignore README for editorconfig 
Because of the nf-core examples it throws errors.
 2020-12-17 17:48:02 -06:00
Edmund Miller
0b6f117d2a
ci(#77): eclint => editorconfig-checker 2020-12-17 17:48:02 -06:00
Harshil Patel
b236d0c834
Update main.nf 2020-12-17 10:24:01 +00:00
kevinmenden
57ab6dbcbf groovy formatting 2020-12-17 10:24:48 +01:00
kevinmenden
8d3fc30eb3 fixed yml formatting 2020-12-17 07:39:34 +01:00