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Author	SHA1	Message	Date
Anders Goncalves da Silva	a4bba006bd	Add reference fasta as input	2021-02-12 11:26:55 -08:00
Anders Goncalves da Silva	6b22bb9782	Add meta.yml	2021-02-12 11:25:40 -08:00
Anders Goncalves da Silva	e5a3e3a5b8	Add ivar consensus to filter.yml	2021-02-12 10:59:46 -08:00
Anders Goncalves da Silva	df9125b46a	Fix test name ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 12:05:01 -08:00
Anders Goncalves da Silva	40bbf94ef9	Update filename for outputted mpileup file in test ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 12:04:46 -08:00
Anders Goncalves da Silva	68de6fef0d	Fix indentation ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 12:04:15 -08:00
Anders Goncalves da Silva	ffa9cf85b1	Clean up header params ... I used these for testing and forgot to remove them Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 12:03:50 -08:00
Anders Goncalves da Silva	1f6419f8f5	Fix indentation ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 10:55:24 -08:00
Anders Goncalves da Silva	e9aa037e7b	Add function to enable output of mpileup ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 10:02:06 -08:00
Anders Goncalves da Silva	06770d5f02	Specify the exact bioconda recipe build ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 10:01:25 -08:00
Anders Goncalves da Silva	362a630f8b	Change suffix of mpileup ouput file ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 10:00:54 -08:00
Anders Goncalves da Silva	884c4658b8	Make mpileup saving optional ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-10 10:00:22 -08:00
Anders Goncalves da Silva	8f546a1f95	Add ivar consensus	2021-02-09 10:26:35 -08:00
Jose Espinosa-Carrasco	1baca83f00	Merge pull request #160 from JoseEspinosa/blast_blastn ... Add blast blastn module	2021-02-09 18:22:23 +01:00
JoseEspinosa	1e9b88b33c	Fixing trailing slashes in .github/filters.yml	2021-02-09 18:16:16 +01:00
JoseEspinosa	9a11e90892	Fixing tests	2021-02-09 17:07:23 +01:00
JoseEspinosa	12ae7b0bff	Adding blast blastn module	2021-02-09 16:58:36 +01:00
Harshil Patel	25db9bc648	Merge pull request #159 from JoseEspinosa/blast_makeblastdb ... Add blast makeblastdb module	2021-02-09 15:36:25 +00:00
JoseEspinosa	d0f09e26b6	Adding blast makeblastdb module to filters.yml	2021-02-09 15:47:53 +01:00
JoseEspinosa	c23b355b35	Add blast makeblastdb module	2021-02-09 15:44:34 +01:00
Harshil Patel	678f104097	Update README.md	2021-02-09 13:27:30 +00:00
Harshil Patel	4113e44141	Merge pull request #158 from JoseEspinosa/untar ... Add untar module	2021-02-09 11:28:57 +00:00
JoseEspinosa	c93e96101a	Add untar module	2021-02-09 11:50:32 +01:00
Harshil Patel	889fced870	Merge pull request #157 from JoseEspinosa/gunzip ... Add gunzip module	2021-02-09 10:40:46 +00:00
Harshil Patel	3ec8a2af02	Merge pull request #154 from nf-core/doc-fixs ... docs: Update README with minor edits	2021-02-09 10:39:17 +00:00
JoseEspinosa	20771ae1bc	Remove meta from input/output meta.yml	2021-02-09 11:02:31 +01:00
JoseEspinosa	b09416a0d0	Correcting meta.yml	2021-02-09 10:51:57 +01:00
JoseEspinosa	9b65961828	Fix file output path on test	2021-02-09 10:22:50 +01:00
JoseEspinosa	f7f06dd6e8	Add gunzip module	2021-02-09 10:05:55 +01:00
Edmund Miller	4c30f2943e	docs: Use one tag in all of the examples ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-08 20:13:11 -06:00
Harshil Patel	46e5df2cf7	Merge pull request #151 from drpatelh/bedtools ... Follow up fixes for bedtools modules added in #79	2021-02-09 01:54:31 +00:00
Edmund Miller	9637a8189a	docs: Update README with minor edits	2021-02-08 19:46:42 -06:00
Harshil Patel	84cf5ea2ef	Merge pull request #153 from JoseEspinosa/bedtools_maskfasta ... Add bedtools maskfasta module	2021-02-08 23:11:00 +00:00
Harshil Patel	132dabbbb6	Update tests/data/bed/C.bed	2021-02-08 23:03:26 +00:00
JoseEspinosa	1b3e5e0283	Fixing module name in test.yml	2021-02-08 23:45:01 +01:00
JoseEspinosa	02d10c25a3	Add bedtools maskfasta module	2021-02-08 23:41:10 +01:00
drpatelh	0b9e32e32d	Remove complement suffix from tests	2021-02-08 22:25:13 +00:00
Harshil Patel	85926b20d4	Merge pull request #134 from JoseEspinosa/bcftools_viralrecon ... Bcftools viralrecon	2021-02-08 21:52:57 +00:00
Harshil Patel	13c1e908a3	Update .github/filters.yml	2021-02-08 21:48:21 +00:00
Harshil Patel	0f6830f7cc	Update tests/software/bcftools/consensus/main.nf	2021-02-08 21:41:24 +00:00
JoseEspinosa	58d28ed896	Fix copy/paste error :P	2021-02-08 21:57:31 +01:00
JoseEspinosa	f8882de456	Renaming test ymls just to: software tool	2021-02-08 21:56:53 +01:00
JoseEspinosa	7a0ba85843	Adding again bcftools modules to filters after solving conflict	2021-02-08 18:10:50 +01:00
JoseEspinosa	f4e322f88d	Merging upstream changes ... # Conflicts: # .github/filters.yml	2021-02-08 18:09:41 +01:00
JoseEspinosa	4fa38ebb7a	Separate test data to break dependencies between bcftools modules tests	2021-02-08 16:51:21 +01:00
JoseEspinosa	83cc25860d	Rearranging tests to test each module separately	2021-02-08 15:16:51 +01:00
JoseEspinosa	fe412797dd	Adressing general comments on PR #134	2021-02-08 15:11:36 +01:00
drpatelh	d9443043ab	Add white background logo for repo	2021-02-08 11:22:03 +00:00
Harshil Patel	d29ef5c52c	Merge pull request #152 from drpatelh/docs ... Update template module and add more docs for testing and finding containers	2021-02-08 10:31:00 +00:00
JoseEspinosa	5071bf5914	Merge remote-tracking branch 'upstream/master' into bcftools_viralrecon	2021-02-08 10:45:57 +01:00