Gregor Sturm
|
9d7cece077
|
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-07-15 12:48:11 +02:00 |
|
Gregor Sturm
|
5a8803ee2f
|
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-07-15 12:48:03 +02:00 |
|
Gregor Sturm
|
a3db769a93
|
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-07-15 12:47:52 +02:00 |
|
Gregor Sturm
|
180310bf0a
|
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-07-15 12:47:42 +02:00 |
|
Gregor Sturm
|
6ad2b570c2
|
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-07-15 12:47:30 +02:00 |
|
Gregor Sturm
|
53897f4d97
|
Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-07-15 12:47:19 +02:00 |
|
Gregor Sturm
|
b00bb83532
|
Document params
|
2020-07-15 11:01:15 +02:00 |
|
Gregor Sturm
|
86d6daf9de
|
Implement publish_results parameter
|
2020-07-15 10:55:52 +02:00 |
|
Gregor Sturm
|
1dc47e7cd3
|
Make publishDir more flexible
|
2020-07-15 10:16:48 +02:00 |
|
Gregor Sturm
|
dd34fa5853
|
Use moduleDir for conda env
|
2020-07-15 09:48:17 +02:00 |
|
Gregor Sturm
|
f7c42ac4fd
|
Add tests for fastqc module
|
2020-07-15 09:48:14 +02:00 |
|
Gregor Sturm
|
167067a92e
|
Clean up module file
|
2020-07-15 09:47:41 +02:00 |
|
JoseEspinosa
|
c485d56972
|
Indentation error in yml
|
2020-07-14 18:00:23 +02:00 |
|
JoseEspinosa
|
562fc74550
|
Indentation error in yml
|
2020-07-14 17:57:42 +02:00 |
|
JoseEspinosa
|
39b9ca205c
|
Correcting path to test data
|
2020-07-14 17:42:03 +02:00 |
|
JoseEspinosa
|
b38135ff6b
|
Moving bedtools/intersectbed to bedtools/intersect
|
2020-07-14 17:40:17 +02:00 |
|
JoseEspinosa
|
c059a485b9
|
Using bedtools{_,-}genomecov instead of genomecov alone
|
2020-07-14 17:31:40 +02:00 |
|
JoseEspinosa
|
71eaa83bf6
|
bedtoools/complementBed changed to bedtools/complement
|
2020-07-14 17:26:45 +02:00 |
|
JoseEspinosa
|
8c3d7aa2d8
|
Standardizing process names to BEDTOOLS_FOO and same with some variables
|
2020-07-14 17:25:32 +02:00 |
|
JoseEspinosa
|
99a8196776
|
Module bedtools-sort added
|
2020-07-14 17:20:12 +02:00 |
|
JoseEspinosa
|
cf9d87c977
|
Module bedtools-merge added
|
2020-07-14 16:49:06 +02:00 |
|
JoseEspinosa
|
708cee9cae
|
Module bedtools-intersectbed added
|
2020-07-14 16:49:05 +02:00 |
|
JoseEspinosa
|
5f80a900e9
|
Changing fasta_sizes by chrom_sizes input path for genomecov
|
2020-07-14 16:47:27 +02:00 |
|
JoseEspinosa
|
f2eb3f68c0
|
Module bedtools-genomecov added
|
2020-07-14 16:47:26 +02:00 |
|
JoseEspinosa
|
f6894c7d3a
|
Module complementbed added
|
2020-07-14 15:50:35 +02:00 |
|
Phil Ewels
|
31c0f617b9
|
Fix up cutadapt tests
|
2020-07-11 17:14:14 +02:00 |
|
Phil Ewels
|
f36902b9af
|
Cutadapt - merge tests into one
|
2020-07-11 17:09:06 +02:00 |
|
Phil Ewels
|
d3f3432451
|
Update test file imports
|
2020-07-11 14:33:12 +02:00 |
|
Phil Ewels
|
014fef2e92
|
Rename tools to software
|
2020-07-11 14:27:21 +02:00 |
|