nvnieuwk
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bf73b6d376
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Merge branch 'master' into new-module-gatk4/reblockgvcf
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2022-06-09 14:57:20 +02:00 |
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Nicolas Vannieuwkerke
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fe9e4ece00
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new module gatk4/reblockgvcf
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2022-06-09 14:56:55 +02:00 |
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nvnieuwk
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6d10909e9f
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Update tests/modules/ensemblvep/main.nf
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2022-06-09 11:55:41 +02:00 |
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nvnieuwk
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e88a4ff70b
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Merge branch 'master' into add-optional-fasta-parameter-to-ensemblvep
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2022-06-09 11:54:22 +02:00 |
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Nicolas Vannieuwkerke
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e60323b757
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typo
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2022-06-09 11:53:59 +02:00 |
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Nicolas Vannieuwkerke
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7947bc662c
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added an extra test without fasta
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2022-06-09 11:53:16 +02:00 |
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Nicolas Vannieuwkerke
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a3202e41ec
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prettier
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2022-06-09 11:47:24 +02:00 |
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Nicolas Vannieuwkerke
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5ccf6fbcc9
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add optional fasta argument to ensemblvep
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2022-06-09 11:45:27 +02:00 |
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SusiJo
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0204d2374b
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Merge remote-tracking branch 'origin/master' into gatk_spark
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2022-06-09 09:33:17 +02:00 |
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James Fellows Yates
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4d7afa21e2
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Add GATK indelrealigner tests
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2022-06-08 21:14:08 +02:00 |
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James A. Fellows Yates
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1fc0d3de4b
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Merge branch 'gatk3-indelrealigner' into upstream-for-indel
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2022-06-08 20:30:19 +02:00 |
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James A. Fellows Yates
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4a2157e5ab
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Merge branch 'master' into gatk-realigntargetcreator
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2022-06-08 20:15:02 +02:00 |
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Ramprasad Neethiraj
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1d67489056
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update test
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2022-06-08 16:36:02 +02:00 |
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Ramprasad Neethiraj
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0b090a6b6d
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Merge branch 'master' of https://github.com/nf-core/modules into rhocall
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2022-06-08 16:34:34 +02:00 |
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Ramprasad Neethiraj
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3cabdfac20
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Merge branch 'master' into update_roh
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2022-06-08 15:04:34 +02:00 |
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Ramprasad Neethiraj
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c079ee2025
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fix test
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2022-06-08 14:48:16 +02:00 |
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Matthias De Smet
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c005a5e007
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formatting
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2022-06-08 14:42:58 +02:00 |
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Matthias De Smet
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100b3f244c
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Apply suggestions from code review
Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
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2022-06-08 14:24:55 +02:00 |
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Matthias De Smet
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71e3056813
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Merge branch 'master' into update/multiqc
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2022-06-08 14:03:26 +02:00 |
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Matthias De Smet
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439d2a9e67
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update mqc inputs
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2022-06-08 13:48:27 +02:00 |
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Maxime U. Garcia
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7230bf2174
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Merge branch 'master' into update_tiddit
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2022-06-08 11:16:01 +02:00 |
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Ramprasad Neethiraj
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16e5e6093c
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Merge branch 'master' of https://github.com/nf-core/modules into rhocall
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2022-06-07 14:45:09 +02:00 |
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SusiJo
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745e47cd33
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add versions.yml
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2022-06-07 14:38:43 +02:00 |
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Ramprasad Neethiraj
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65a0fb959f
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rhocall
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2022-06-07 14:37:03 +02:00 |
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SusiJo
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e78ad2f88b
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Merge remote-tracking branch 'origin' into gatk_spark
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2022-06-07 14:00:26 +02:00 |
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Matthias De Smet
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bffd1c562b
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Merge branch 'master' into update/multiqc
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2022-06-07 13:59:00 +02:00 |
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SusiJo
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dbca9e8b36
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adjusted prefix + test + authors
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2022-06-07 13:58:57 +02:00 |
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Matthias De Smet
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e5bf87aec3
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possible fix for name collisions
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2022-06-07 13:58:27 +02:00 |
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Ramprasad Neethiraj
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9d6697bdea
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template
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2022-06-07 12:14:40 +02:00 |
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Nicolas Vannieuwkerke
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771425e7a0
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add threads to calibratedragstrmodel
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2022-06-07 12:11:18 +02:00 |
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SusiJo
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1368956d88
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Merge remote-tracking branch 'origin/master' into gatk_spark
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2022-06-07 11:00:33 +02:00 |
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James A. Fellows Yates
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d292f822e4
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Merge branch 'master' into gatk-realigntargetcreator
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2022-06-03 21:33:22 +02:00 |
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James A. Fellows Yates
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d2b240a17a
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Merge branch 'master' into gatk-unifiedgenotyper
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2022-06-03 21:24:09 +02:00 |
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Robert A. Petit III
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24ca2ed464
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Merge branch 'master' into rp3-add-snippy
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2022-06-03 13:01:05 -06:00 |
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MaxUlysse
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97e66015ca
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add test + fix issues
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2022-06-03 15:51:02 +02:00 |
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SusiJo
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230224700e
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change prefix
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2022-06-03 13:20:45 +02:00 |
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SusiJo
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1db7771ea9
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Merge branch 'nf-core:master' into gatk_spark
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2022-06-03 13:17:35 +02:00 |
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MaxUlysse
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f1a5cc07db
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restructure tiddit/sv + test (just one for now)
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2022-06-03 13:00:29 +02:00 |
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MaxUlysse
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40996cdbe1
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update tiddit/cov + more tests
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2022-06-03 12:07:16 +02:00 |
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MaxUlysse
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36ffd4fbf7
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Merge remote-tracking branch 'upstream/master' into update_tiddit
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2022-06-03 11:38:33 +02:00 |
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Rike
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2c9e2f5e73
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Update TIDDIT to 3.0.0
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2022-06-03 10:52:50 +02:00 |
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James Fellows Yates
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a565d9072a
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Add GATK UnifiedGenotyper
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2022-06-02 21:39:39 +02:00 |
|
James Fellows Yates
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544b62df45
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Star work on GATK UG
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2022-06-02 21:11:17 +02:00 |
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James Fellows Yates
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9a4f22e8d1
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Merge branch 'gatk-realigntargetcreator' of github.com:jfy133/nf-core-modules into gatk-realigntargetcreator
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2022-06-02 20:32:03 +02:00 |
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James Fellows Yates
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c469a2b35e
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Fux tests
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2022-06-02 20:32:00 +02:00 |
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James A. Fellows Yates
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abc619a3e2
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Merge branch 'master' into gatk-realigntargetcreator
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2022-06-02 20:24:24 +02:00 |
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SusiJo
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1b93cde9ff
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Merge branch 'master' into gatk_spark
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2022-06-02 16:24:39 +02:00 |
|
Nicolas Vannieuwkerke
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b4b1f3b81d
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add intervals to calibratedragstrmodel
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2022-06-02 16:20:12 +02:00 |
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nvnieuwk
|
e107d61069
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Update tests/modules/gatk4/haplotypecaller/test.yml
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2022-06-02 14:20:15 +02:00 |
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nvnieuwk
|
e419d306df
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Update tests/modules/gatk4/haplotypecaller/test.yml
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2022-06-02 14:20:10 +02:00 |
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