Chris Cheshire
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d7fb969a74
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Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:10:23 +01:00 |
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Chris Cheshire
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40e6bd9dc1
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bowtie2|fix tags error
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2022-05-03 12:07:04 +01:00 |
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Chris Cheshire
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0f1ee7e50d
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bowtie2|test fixes
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2022-05-03 12:04:51 +01:00 |
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Chris Cheshire
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61f68913fe
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Merge branch 'master' into expected_error_fix
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2022-05-03 11:49:35 +01:00 |
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Chris Cheshire
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768073be63
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bowtie2|Added support for large indexes
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2022-05-03 11:46:19 +01:00 |
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Lauri Mesilaakso
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6367c6a1ad
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:41:25 +03:00 |
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James A. Fellows Yates
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b61cdc7355
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Merge pull request #1570 from nvnieuwk/vardict-java
new_module:vardict-java
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2022-05-03 10:26:41 +02:00 |
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nvnieuwk
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f85787b19e
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Merge branch 'master' into vardict-java
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2022-05-03 10:17:04 +02:00 |
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nvnieuwk
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8187641280
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:45 +02:00 |
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nvnieuwk
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11c6faf433
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:36 +02:00 |
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nvnieuwk
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01085b3e09
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:30 +02:00 |
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nvnieuwk
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1609dfc96d
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:20 +02:00 |
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nvnieuwk
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3cdbdf50fc
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:14 +02:00 |
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nvnieuwk
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2dff193b54
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:15:59 +02:00 |
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nvnieuwk
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7c89af359c
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:15:51 +02:00 |
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Nicolas Vannieuwkerke
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49ba3adbde
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Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 10:15:33 +02:00 |
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Nicolas Vannieuwkerke
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d33253513f
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put the version on top of the file
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2022-05-03 10:15:30 +02:00 |
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Lauri Mesilaakso
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773e6f8e93
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:13:55 +03:00 |
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Lucpen
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3891eca3c3
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Merge pull request #1596 from nf-core/adding_stub_to_modules
feat added stub to modules gatk4_mergebamalignment_mutect2_revertsam_samtofastq, samtools_view
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2022-05-03 10:13:25 +02:00 |
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nvnieuwk
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278d41b6bf
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Merge branch 'master' into vardict-java
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2022-05-03 09:59:05 +02:00 |
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ljmesi
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59d6e6e1dd
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Add updated md5sums
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2022-05-03 09:56:50 +02:00 |
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ljmesi
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5503903457
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Add compression for output fastq file
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2022-05-03 09:46:04 +02:00 |
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Ramprasad Neethiraj
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6f787aea71
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Merge branch 'master' into adding_stub_to_modules
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2022-05-03 09:43:16 +02:00 |
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Lauri Mesilaakso
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218400b632
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Merge pull request #1600 from Genomic-Medicine-Linkoping/add_handling_of_alternative_fn_suffix_for_metaphlan3
Add additional handling of fq.gz file name suffix
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2022-05-03 09:50:09 +03:00 |
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Lauri Mesilaakso
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77054795fb
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Merge branch 'master' into add_handling_of_alternative_fn_suffix_for_metaphlan3
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2022-05-03 09:38:51 +03:00 |
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Nicolas Vannieuwkerke
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71c5d21374
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ran prettier
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2022-05-03 08:34:12 +02:00 |
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Nicolas Vannieuwkerke
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9127f92ddd
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Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 08:29:50 +02:00 |
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Nicolas Vannieuwkerke
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9a10e5beb5
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Added the missing inputs in meta.yml + correct notation
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2022-05-03 08:29:46 +02:00 |
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Matthias De Smet
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1687bfcb85
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Merge branch 'master' into add-slimfastq
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2022-05-03 08:22:49 +02:00 |
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Matthias De Smet
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a67c06af81
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Merge branch 'master' into vardict-java
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2022-05-03 08:22:19 +02:00 |
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Nicolas Vannieuwkerke
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d8782d7976
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Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 08:20:13 +02:00 |
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Nicolas Vannieuwkerke
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b8a59c2b17
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Fixed version annotation
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2022-05-03 08:20:10 +02:00 |
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Sateesh Peri
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88a9a55c80
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Merge pull request #1574 from jvhagey/srst2/srst2
new module: srst2/srst2
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2022-05-02 20:21:23 -04:00 |
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Jill V. Hagey, PhD
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23cfb5dd42
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Update test.yml
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2022-05-02 18:38:48 -04:00 |
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Jill V. Hagey, PhD
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db9681029c
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Update test.yml
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2022-05-02 18:27:01 -04:00 |
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Jill V. Hagey, PhD
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7b0d6f96fd
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Update test.yml
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2022-05-02 18:20:54 -04:00 |
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Jill V. Hagey, PhD
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e5d7c80bb5
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Update test.yml
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2022-05-02 18:13:14 -04:00 |
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Moritz E. Beber
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16aa3915e3
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feat: add module for slimfastq
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2022-05-02 23:16:59 +02:00 |
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Carpanzano
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d2e1408b0f
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updated content for html file in test yml
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2022-05-02 18:44:05 +02:00 |
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carpanz
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e8b2445878
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updated file location in test yml
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2022-05-02 18:43:20 +02:00 |
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Carpanzano
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1deb789502
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synced withName ext.args with process name
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2022-05-02 18:39:45 +02:00 |
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Carpanzano
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5136ed29c4
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removed include and changed process name due to expected folder name before tokenize
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2022-05-02 18:38:59 +02:00 |
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Ramprasad Neethiraj
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3194729f82
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Merge branch 'master' into adding_stub_to_modules
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2022-05-02 18:31:55 +02:00 |
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Jill V. Hagey, PhD
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99a8711997
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Update tests/modules/srst2/srst2/test.yml
Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>
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2022-05-02 12:26:56 -04:00 |
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JIANHONG OU
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5735f515f8
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fix a typo in version export.
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2022-05-02 12:25:48 -04:00 |
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Carpanzano
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32b8f3f612
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adding contain for html output in test yml
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2022-05-02 18:21:26 +02:00 |
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carpanz
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6e83196634
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updating test yml after removing kronadb from test
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2022-05-02 18:20:36 +02:00 |
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Carpanzano
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b0a2d36ec1
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removing kronadb module from testing ktimporttaxonomy test - NB: temporarily using test db while testdb is added to test-datasets
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2022-05-02 18:16:08 +02:00 |
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Sateesh Peri
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c56b371713
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Merge branch 'master' into srst2/srst2
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2022-05-02 12:13:11 -04:00 |
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Carpanzano
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c07ae8c483
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fixed lint in ktimporttaxonomy
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2022-05-02 17:47:45 +02:00 |
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