Commit graph

325 commits

Author SHA1 Message Date
drpatelh
cb08a7326a Change NF version 2020-08-07 00:38:56 +01:00
drpatelh
f014e67de6 Remove old outputs 2020-08-07 00:37:13 +01:00
drpatelh
2c7abca088 Move unit tests to deprecated 2020-08-07 00:36:05 +01:00
drpatelh
16d3ad5d06 Adapt script for meta 2020-08-07 00:35:34 +01:00
Harshil Patel
526ad8a457
Merge pull request #56 from drpatelh/master
Final README updates
2020-08-06 16:33:33 +01:00
drpatelh
a0ca7b1738 Update meta.yml link 2020-08-06 16:30:32 +01:00
drpatelh
c98b32dfa8 Add link to functions file 2020-08-06 16:26:57 +01:00
drpatelh
70607cf5e2 Adjust spacing 2020-08-06 16:19:31 +01:00
drpatelh
b244160e78 Fix indent 2020-08-06 16:18:16 +01:00
drpatelh
bca0d598bf Add more links 2020-08-06 16:14:36 +01:00
drpatelh
28143c32fd Add links 2020-08-06 16:12:06 +01:00
drpatelh
5e32585acf Fix markdownlint 2020-08-06 16:08:52 +01:00
drpatelh
bd137343f0 Remove spaces 2020-08-06 16:07:10 +01:00
drpatelh
14fcbc52f1 Update testing section 2020-08-06 16:04:19 +01:00
Harshil Patel
f10b7810f1
Merge pull request #55 from drpatelh/master
Add module template
2020-08-06 15:35:11 +01:00
drpatelh
b3e3e43089 Update README 2020-08-06 15:34:44 +01:00
drpatelh
e2b47a6fa3 Add software requirements section 2020-08-06 15:22:32 +01:00
drpatelh
21efc24299 Re-write requirements 2020-08-06 14:50:09 +01:00
drpatelh
1b294f4249 Add guidelines section 2020-08-06 13:43:19 +01:00
drpatelh
c7c65e3ad0 Reword again 2020-08-06 13:38:09 +01:00
drpatelh
259c4f9634 Reword sentence 2020-08-06 13:36:27 +01:00
drpatelh
f5068c897f Add example tools 2020-08-06 13:33:16 +01:00
drpatelh
63a2cce2da Add include section 2020-08-06 13:23:56 +01:00
drpatelh
7b3bc338d4 Add info about GitHub API 2020-08-06 13:04:23 +01:00
drpatelh
154d2b0c08 Add separate bullet 2020-08-06 12:57:53 +01:00
drpatelh
4f82982d04 Truncate console text 2020-08-06 12:55:36 +01:00
drpatelh
9bd5596732 Add citation to TOC 2020-08-06 12:52:55 +01:00
drpatelh
680c58315a Add citation 2020-08-06 12:52:04 +01:00
drpatelh
9c8d3af66e Add direct Slack link 2020-08-06 12:46:36 +01:00
drpatelh
3e0c63a0a0 Update badge 2020-08-06 12:42:45 +01:00
drpatelh
3428157910 Add badges 2020-08-06 12:39:33 +01:00
drpatelh
d510854648 Add note about other commands 2020-08-06 12:27:01 +01:00
drpatelh
9142ad7016 Move terminology to bottom 2020-08-06 12:17:24 +01:00
drpatelh
c2f797d820 Update existing pipeline usage 2020-08-06 12:12:40 +01:00
drpatelh
2c9cd2d89b Update main script 2020-08-06 12:00:38 +01:00
drpatelh
83b61fcccd Update README 2020-08-06 12:00:24 +01:00
drpatelh
530b4c1bd9 Add test directory 2020-08-06 11:32:38 +01:00
drpatelh
b7d0ee043e Initial commit 2020-08-06 11:32:18 +01:00
drpatelh
f021ab119b Initial commit 2020-08-06 11:32:11 +01:00
drpatelh
ab512be9aa Initial commit 2020-08-06 11:31:52 +01:00
Harshil Patel
d286fdf995
Merge pull request #54 from drpatelh/master
Hard copy functions.nf
2020-08-05 18:39:53 +01:00
drpatelh
f315a7b3c4 Hard copy files 2020-08-05 18:38:27 +01:00
Harshil Patel
1073ea47fa
Merge pull request #53 from drpatelh/master
Add in chipseq modules
2020-08-05 17:46:59 +01:00
drpatelh
71a6a9decc Fix markdownlint 2020-08-05 17:46:23 +01:00
drpatelh
9988dacfc6 Fix yaml lint 2020-08-05 17:32:47 +01:00
drpatelh
ab8a9025a0 Copy across test data and docs for trimgalore 2020-08-05 17:28:25 +01:00
drpatelh
50fce8b3cf Copy across test data and docs for samtools sort 2020-08-05 17:28:09 +01:00
drpatelh
de9d33da12 Copy across test data and docs for samtools index 2020-08-05 17:27:58 +01:00
drpatelh
fb697eca2f Copy across test data and docs for bwa mem 2020-08-05 17:27:42 +01:00
drpatelh
da4dcee934 Copy across test data and docs for bwa index 2020-08-05 17:27:28 +01:00