978 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
JoseEspinosa	1e9b88b33c	Fixing trailing slashes in .github/filters.yml	2021-02-09 18:16:16 +01:00
JoseEspinosa	e118bc049a	Add bedtools getfasta module	2021-02-09 17:56:51 +01:00
JoseEspinosa	7536b386a5	Correct channel declaration on bedtools_maskfasta	2021-02-09 17:56:01 +01:00
JoseEspinosa	9a11e90892	Fixing tests	2021-02-09 17:07:23 +01:00
JoseEspinosa	12ae7b0bff	Adding blast blastn module	2021-02-09 16:58:36 +01:00
Harshil Patel	25db9bc648	Merge pull request #159 from JoseEspinosa/blast_makeblastdb ... Add blast makeblastdb module	2021-02-09 15:36:25 +00:00
JoseEspinosa	d0f09e26b6	Adding blast makeblastdb module to filters.yml	2021-02-09 15:47:53 +01:00
JoseEspinosa	c23b355b35	Add blast makeblastdb module	2021-02-09 15:44:34 +01:00
Harshil Patel	678f104097	Update README.md	2021-02-09 13:27:30 +00:00
Harshil Patel	4113e44141	Merge pull request #158 from JoseEspinosa/untar ... Add untar module	2021-02-09 11:28:57 +00:00
JoseEspinosa	c93e96101a	Add untar module	2021-02-09 11:50:32 +01:00
Harshil Patel	889fced870	Merge pull request #157 from JoseEspinosa/gunzip ... Add gunzip module	2021-02-09 10:40:46 +00:00
Harshil Patel	3ec8a2af02	Merge pull request #154 from nf-core/doc-fixs ... docs: Update README with minor edits	2021-02-09 10:39:17 +00:00
JoseEspinosa	20771ae1bc	Remove meta from input/output meta.yml	2021-02-09 11:02:31 +01:00
JoseEspinosa	b09416a0d0	Correcting meta.yml	2021-02-09 10:51:57 +01:00
JoseEspinosa	9b65961828	Fix file output path on test	2021-02-09 10:22:50 +01:00
JoseEspinosa	f7f06dd6e8	Add gunzip module	2021-02-09 10:05:55 +01:00
Edmund Miller	4c30f2943e	docs: Use one tag in all of the examples ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-02-08 20:13:11 -06:00
Harshil Patel	46e5df2cf7	Merge pull request #151 from drpatelh/bedtools ... Follow up fixes for bedtools modules added in #79	2021-02-09 01:54:31 +00:00
Edmund Miller	9637a8189a	docs: Update README with minor edits	2021-02-08 19:46:42 -06:00
Harshil Patel	84cf5ea2ef	Merge pull request #153 from JoseEspinosa/bedtools_maskfasta ... Add bedtools maskfasta module	2021-02-08 23:11:00 +00:00
Harshil Patel	132dabbbb6	Update tests/data/bed/C.bed	2021-02-08 23:03:26 +00:00
JoseEspinosa	1b3e5e0283	Fixing module name in test.yml	2021-02-08 23:45:01 +01:00
JoseEspinosa	02d10c25a3	Add bedtools maskfasta module	2021-02-08 23:41:10 +01:00
drpatelh	0b9e32e32d	Remove complement suffix from tests	2021-02-08 22:25:13 +00:00
Harshil Patel	85926b20d4	Merge pull request #134 from JoseEspinosa/bcftools_viralrecon ... Bcftools viralrecon	2021-02-08 21:52:57 +00:00
Harshil Patel	13c1e908a3	Update .github/filters.yml	2021-02-08 21:48:21 +00:00
Harshil Patel	0f6830f7cc	Update tests/software/bcftools/consensus/main.nf	2021-02-08 21:41:24 +00:00
JoseEspinosa	58d28ed896	Fix copy/paste error :P	2021-02-08 21:57:31 +01:00
JoseEspinosa	f8882de456	Renaming test ymls just to: software tool	2021-02-08 21:56:53 +01:00
JoseEspinosa	7a0ba85843	Adding again bcftools modules to filters after solving conflict	2021-02-08 18:10:50 +01:00
JoseEspinosa	f4e322f88d	Merging upstream changes ... # Conflicts: # .github/filters.yml	2021-02-08 18:09:41 +01:00
JoseEspinosa	4fa38ebb7a	Separate test data to break dependencies between bcftools modules tests	2021-02-08 16:51:21 +01:00
JoseEspinosa	83cc25860d	Rearranging tests to test each module separately	2021-02-08 15:16:51 +01:00
JoseEspinosa	fe412797dd	Adressing general comments on PR #134	2021-02-08 15:11:36 +01:00
drpatelh	d9443043ab	Add white background logo for repo	2021-02-08 11:22:03 +00:00
Harshil Patel	d29ef5c52c	Merge pull request #152 from drpatelh/docs ... Update template module and add more docs for testing and finding containers	2021-02-08 10:31:00 +00:00
JoseEspinosa	5071bf5914	Merge remote-tracking branch 'upstream/master' into bcftools_viralrecon	2021-02-08 10:45:57 +01:00
drpatelh	c9cfdd31f3	Fix barfing linters	2021-02-08 00:57:06 +00:00
drpatelh	c92fe8701a	Add docs about docs	2021-02-08 00:53:32 +00:00
drpatelh	41dfaf2a19	Use Nextflow comments	2021-02-08 00:44:45 +00:00
drpatelh	56752b90f5	Fix indents	2021-02-08 00:40:36 +00:00
drpatelh	a8efd112b9	Add docs about finding and adding containers	2021-02-08 00:35:50 +00:00
drpatelh	d4b278eb65	Update docs	2021-02-08 00:01:48 +00:00
drpatelh	9cb958ca25	Update commands for pytest	2021-02-07 23:50:21 +00:00
drpatelh	07f62a76c5	Re-word CI tests	2021-02-07 23:40:26 +00:00
drpatelh	6bbb71a022	Update link to tests template	2021-02-07 23:26:54 +00:00
drpatelh	eeb496cf5c	Fix filters	2021-02-07 23:23:08 +00:00
drpatelh	83a50d8ae0	Rename SOFTWARE_TOOL to TOOL_SUBTOOL	2021-02-07 23:20:53 +00:00
Harshil Patel	dcabde6b85	Merge pull request #139 from nf-core/testing-docs ... Add documentation for Testing	2021-02-07 22:35:01 +00:00