Commit graph

1348 commits

Author SHA1 Message Date
Harshil Patel
9069ed5921
Merge pull request #165 from drpatelh/pangolin
Bump Pangolin version and minor amendments
2021-02-10 11:22:47 +00:00
drpatelh
e63279e6a2 Pin pangoLearn version 2021-02-10 10:28:27 +00:00
drpatelh
1d00a4a11c Update md5sum 2021-02-09 23:31:39 +00:00
drpatelh
79d730f2c3 Change output name 2021-02-09 23:27:08 +00:00
drpatelh
7f629bca45 OCDness 2021-02-09 23:26:55 +00:00
drpatelh
b03846600d Tidy up 2021-02-09 23:26:45 +00:00
drpatelh
6795fe04b8 Rename output channel 2021-02-09 23:26:18 +00:00
drpatelh
2b9129b3f9 Change txt channel output 2021-02-09 23:09:22 +00:00
drpatelh
d50d070c06 Change txt channel output 2021-02-09 23:09:18 +00:00
drpatelh
0b33b6d081 Add missing build ids 2021-02-09 23:03:13 +00:00
Harshil Patel
6765db81be
Merge pull request #163 from JoseEspinosa/fix_conda_build
Add conda build id
2021-02-09 22:47:15 +00:00
JoseEspinosa
e8dc199dc8 Adding conda build to blast modules 2021-02-09 23:04:12 +01:00
JoseEspinosa
2fa14f2ec8 Adding conda build to bcftools modules 2021-02-09 23:00:19 +01:00
Harshil Patel
6319fb242e
Merge pull request #161 from JoseEspinosa/bedtools_getfasta
Add bedtools getfasta module
2021-02-09 21:42:16 +00:00
Harshil Patel
28866f3dc7
Update tests/software/bedtools/maskfasta/main.nf 2021-02-09 21:36:38 +00:00
Harshil Patel
3f431014a4
Update software/bedtools/getfasta/main.nf 2021-02-09 21:34:40 +00:00
Harshil Patel
aaa088dba8
Update tests/software/bedtools/getfasta/main.nf 2021-02-09 21:34:29 +00:00
Anders Goncalves da Silva
8f546a1f95 Add ivar consensus 2021-02-09 10:26:35 -08:00
JoseEspinosa
68b85d9191 Merge remote-tracking branch 'upstream/master' into bedtools_getfasta 2021-02-09 18:23:24 +01:00
Jose Espinosa-Carrasco
1baca83f00
Merge pull request #160 from JoseEspinosa/blast_blastn
Add blast blastn module
2021-02-09 18:22:23 +01:00
JoseEspinosa
1e9b88b33c Fixing trailing slashes in .github/filters.yml 2021-02-09 18:16:16 +01:00
JoseEspinosa
e118bc049a Add bedtools getfasta module 2021-02-09 17:56:51 +01:00
JoseEspinosa
7536b386a5 Correct channel declaration on bedtools_maskfasta 2021-02-09 17:56:01 +01:00
JoseEspinosa
9a11e90892 Fixing tests 2021-02-09 17:07:23 +01:00
JoseEspinosa
12ae7b0bff Adding blast blastn module 2021-02-09 16:58:36 +01:00
Harshil Patel
25db9bc648
Merge pull request #159 from JoseEspinosa/blast_makeblastdb
Add blast makeblastdb module
2021-02-09 15:36:25 +00:00
JoseEspinosa
d0f09e26b6 Adding blast makeblastdb module to filters.yml 2021-02-09 15:47:53 +01:00
JoseEspinosa
c23b355b35 Add blast makeblastdb module 2021-02-09 15:44:34 +01:00
Harshil Patel
678f104097
Update README.md 2021-02-09 13:27:30 +00:00
Harshil Patel
4113e44141
Merge pull request #158 from JoseEspinosa/untar
Add untar module
2021-02-09 11:28:57 +00:00
JoseEspinosa
c93e96101a Add untar module 2021-02-09 11:50:32 +01:00
Harshil Patel
889fced870
Merge pull request #157 from JoseEspinosa/gunzip
Add gunzip module
2021-02-09 10:40:46 +00:00
Harshil Patel
3ec8a2af02
Merge pull request #154 from nf-core/doc-fixs
docs: Update README with minor edits
2021-02-09 10:39:17 +00:00
JoseEspinosa
20771ae1bc Remove meta from input/output meta.yml 2021-02-09 11:02:31 +01:00
JoseEspinosa
b09416a0d0 Correcting meta.yml 2021-02-09 10:51:57 +01:00
JoseEspinosa
9b65961828 Fix file output path on test 2021-02-09 10:22:50 +01:00
JoseEspinosa
f7f06dd6e8 Add gunzip module 2021-02-09 10:05:55 +01:00
Edmund Miller
4c30f2943e
docs: Use one tag in all of the examples
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-02-08 20:13:11 -06:00
Harshil Patel
46e5df2cf7
Merge pull request #151 from drpatelh/bedtools
Follow up fixes for bedtools modules added in #79
2021-02-09 01:54:31 +00:00
Edmund Miller
9637a8189a
docs: Update README with minor edits 2021-02-08 19:46:42 -06:00
Harshil Patel
84cf5ea2ef
Merge pull request #153 from JoseEspinosa/bedtools_maskfasta
Add bedtools maskfasta module
2021-02-08 23:11:00 +00:00
Harshil Patel
132dabbbb6
Update tests/data/bed/C.bed 2021-02-08 23:03:26 +00:00
JoseEspinosa
1b3e5e0283 Fixing module name in test.yml 2021-02-08 23:45:01 +01:00
JoseEspinosa
02d10c25a3 Add bedtools maskfasta module 2021-02-08 23:41:10 +01:00
drpatelh
0b9e32e32d Remove complement suffix from tests 2021-02-08 22:25:13 +00:00
Harshil Patel
85926b20d4
Merge pull request #134 from JoseEspinosa/bcftools_viralrecon
Bcftools viralrecon
2021-02-08 21:52:57 +00:00
Harshil Patel
13c1e908a3
Update .github/filters.yml 2021-02-08 21:48:21 +00:00
Harshil Patel
0f6830f7cc
Update tests/software/bcftools/consensus/main.nf 2021-02-08 21:41:24 +00:00
JoseEspinosa
58d28ed896 Fix copy/paste error :P 2021-02-08 21:57:31 +01:00
JoseEspinosa
f8882de456 Renaming test ymls just to: software tool 2021-02-08 21:56:53 +01:00