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applybqsr
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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applybqsrspark
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similar issues arise with bqsrspark, also use broadinstitute container
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2022-06-09 15:29:00 +02:00 |
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applyvqsr
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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baserecalibrator
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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baserecalibratorspark
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similar issues arise with bqsrspark, also use broadinstitute container
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2022-06-09 15:29:00 +02:00 |
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bedtointervallist
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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calculatecontamination
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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calibratedragstrmodel
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changed to label to medium
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2022-06-07 12:17:14 +02:00 |
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cnnscorevariants
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remove variables used for test data generation, add tbi
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2022-05-22 13:34:56 +02:00 |
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collectreadcounts
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new module gatk4/collectreadcounts (#1998)
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2022-09-05 10:49:13 +02:00 |
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collectsvevidence
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new module gatk4/collectsvevidence (#2039)
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2022-09-09 10:58:47 +02:00 |
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combinegvcfs
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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composestrtablefile
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spaces fix
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2022-06-01 09:22:09 +02:00 |
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createsequencedictionary
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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createsomaticpanelofnormals
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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estimatelibrarycomplexity
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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fastqtosam
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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filtermutectcalls
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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filtervarianttranches
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fix version
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2022-05-23 12:15:33 +02:00 |
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gatherbqsrreports
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Improve descriptions for modules with missing
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2022-07-06 12:03:08 +02:00 |
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gatherpileupsummaries
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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genomicsdbimport
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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genotypegvcfs
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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getpileupsummaries
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GATK/Getpileupsummaries: If no intervals use variants instead (#1787)
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2022-06-16 15:00:01 +02:00 |
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haplotypecaller
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added dragstr model to haplotypecaller
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2022-06-02 14:08:09 +02:00 |
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indexfeaturefile
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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intervallisttobed
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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intervallisttools
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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learnreadorientationmodel
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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leftalignandtrimvariants
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Add module: gatk4/leftalignandtrimvariants (#1808)
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2022-06-28 10:44:08 +02:00 |
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markduplicates
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MD finally supports cram output (#2019)
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2022-09-07 11:04:58 +02:00 |
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markduplicatesspark
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remove singulairty container
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2022-06-09 15:16:11 +02:00 |
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mergebamalignment
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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mergemutectstats
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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mergevcfs
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Removing redundant empty line
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2022-05-31 15:34:34 +00:00 |
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mutect2
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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printsvevidence
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new module gatk4/printsvevidence (#2103)
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2022-09-27 08:30:16 +02:00 |
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reblockgvcf
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Update modules/gatk4/reblockgvcf/main.nf
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2022-06-09 15:11:18 +02:00 |
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revertsam
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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samtofastq
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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selectvariants
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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splitintervals
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added tmp-dir + alignment correction
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2022-05-13 14:35:22 +02:00 |
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splitncigarreads
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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variantfiltration
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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variantrecalibrator
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Variant recalibration (#1885)
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2022-07-15 09:21:34 +02:00 |
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