| .. |
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abacas
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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abricate
|
add module for abricate (#1280)
|
2022-02-18 18:00:21 -07:00 |
|
adapterremoval
|
Refactor adapterremoval (#1491)
|
2022-04-04 21:40:35 +02:00 |
|
adapterremovalfixprefix
|
Add AdapterRemovalFixPrefix (#1424)
|
2022-03-21 11:26:12 +01:00 |
|
agrvate
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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allelecounter
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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amplify/predict
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add module AMPlify (#1498)
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2022-04-20 11:53:26 +02:00 |
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amps
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Untar unzip meta (#1408)
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2022-03-21 14:49:28 +01:00 |
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amrfinderplus
|
add amrfinderplus module (#1284)
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2022-02-19 23:02:23 +00:00 |
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antismash/antismashlitedownloaddatabases
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Update checksum in test.yml
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2022-04-28 17:09:40 +02:00 |
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arriba
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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artic
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Untar unzip meta (#1408)
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2022-03-21 14:49:28 +01:00 |
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ascat
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round the < to ( to make markdown work for meta.yml (#1395)
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2022-03-16 13:29:11 +01:00 |
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assemblyscan
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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ataqv/ataqv
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
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bakta
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update bakta to latest version (v1.4.0) (#1428)
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2022-03-24 10:49:17 -06:00 |
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bamaligncleaner
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bamcmp
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bamcmp (#1244)
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2022-02-02 16:38:41 +00:00 |
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bamtools
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Update tests/modules/bamtools/split/test.yml
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2022-04-22 19:35:34 +02:00 |
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bamutil/trimbam
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bandage/image
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bbmap
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Samtools version update (#1507)
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2022-04-11 14:26:28 +02:00 |
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bcftools
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bcftools/annotate follow up corrections (#1359)
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2022-02-28 10:16:29 -05:00 |
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bclconvert
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Module/bclconvert (#1485)
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2022-04-21 15:39:22 +02:00 |
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bedtools
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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biobambam
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New tool: biobambam/bamsormadup (#1478)
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2022-04-06 08:18:23 +02:00 |
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biscuit
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Add core Biscuit tools (#1354)
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2022-03-14 09:34:22 -04:00 |
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bismark
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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blast
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bowtie
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bowtie2
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bowtie2|fix tags error
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2022-05-03 12:07:04 +01:00 |
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bracken/bracken
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Add bracken (#1423)
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2022-03-22 16:40:21 +01:00 |
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busco
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remove 'auto' test
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2022-05-06 13:33:27 +00:00 |
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bwa
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Samtools version update (#1507)
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2022-04-11 14:26:28 +02:00 |
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bwamem2
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Add new boolean sort_bam as input to be able to chose between sort and view in bwamem and bwamem2mem (#1125)
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2021-12-08 14:31:27 +00:00 |
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bwameth
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
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cat
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Update cat module (#1469)
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2022-03-31 13:42:44 +02:00 |
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cellranger
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Untar unzip meta (#1408)
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2022-03-21 14:49:28 +01:00 |
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centrifuge
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Add centrifuge_kreport module (#1514)
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2022-04-13 15:33:51 +02:00 |
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checkm/lineagewf
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
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chromap
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Samtools version update (#1507)
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2022-04-11 14:26:28 +02:00 |
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clonalframeml
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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cmseq/polymut
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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cnvkit/batch
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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cnvpytor
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combine multiple pytor
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2022-05-05 23:59:12 +02:00 |
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controlfreec
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Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504)
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2022-04-08 11:43:40 +02:00 |
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cooler
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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csvtk
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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custom
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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cutadapt
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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damageprofiler
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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dastool
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Update DASTool to 1.1.4 (#1471)
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2022-04-01 11:33:07 +02:00 |
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dedup
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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deeparg
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Deeparg singularity container fix 2 (#1406)
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2022-03-18 16:21:55 +01:00 |
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deeptools
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Add deeptools bamcoverage (#1316)
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2022-02-18 09:35:41 +01:00 |
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deepvariant
|
Update version & add intervals usage (#1214)
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2022-01-17 16:40:31 +01:00 |
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delly/call
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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diamond
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Update tests/modules/diamond/blastx/main.nf
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2022-05-02 13:17:22 +02:00 |
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dragmap
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
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dragonflye
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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dshbio
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Update dsh-bio to version 2.0.7, add support for compressed GFA 1.0 format (#1207)
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2022-01-17 09:24:40 +00:00 |
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ectyper
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
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elprep
|
update config
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2022-04-22 13:13:39 +02:00 |
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emmtyper
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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ensemblvep
|
update ensemblvep and snpeff modules
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2022-05-05 12:57:14 +02:00 |
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expansionhunter
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add stub to modules used in raredisease pipeline (#1206)
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2022-03-28 17:48:39 +02:00 |
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faqcs
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Faqcs patch to add tests for --debug output (#1368)
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2022-03-02 08:53:05 -05:00 |
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fargene
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takes gunzip out of fargene main.nf (#1090)
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2021-11-29 14:32:23 +01:00 |
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fastani
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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fastp
|
Bump software versions for viralrecon modules (#1198)
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2022-01-07 17:52:39 +00:00 |
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fastqc
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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fastqscan
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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fasttree
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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fgbio
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Added UMI sub-workflow (#1098)
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2021-12-09 11:16:40 +01:00 |
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filtlong
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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flash
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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freebayes
|
Update intervals (#1278)
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2022-02-10 10:34:22 +01:00 |
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gamma
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new module: GAMMA (#1532)
|
2022-04-23 10:12:06 -04:00 |
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gatk4
|
Update tests/modules/gatk4/mutect2/main.nf
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2022-05-02 15:14:05 +02:00 |
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genmap
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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genrich
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gffread
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Replace remaining task.ext.suffix with task.ext.prefix (#1117)
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2021-12-07 15:00:43 +01:00 |
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glnexus
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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graphmap2
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gstama
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New Module: gstama/polyacleanup (#1468)
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2022-03-31 09:11:51 -04:00 |
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gtdbtk/classifywf
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gubbins
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gunc
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gunzip
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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hamronization
|
Add hamronization/summarize (#1366)
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2022-03-03 08:02:04 +01:00 |
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happy
|
Split the module into two parts
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2022-05-04 15:29:48 +02:00 |
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hicap
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
|
hifiasm
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
|
hisat2
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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hmmcopy
|
hmmcopy/mapCounter (#1175)
|
2021-12-17 15:39:50 +00:00 |
|
hmmer
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Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
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homer
|
Fix homer/maketagdirectory output collision (#1456)
|
2022-03-27 03:17:42 +00:00 |
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hpsuissero
|
add module for hpsuisero (#1331)
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2022-02-27 17:58:35 -07:00 |
|
ichorcna
|
Prettier (#1405)
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2022-03-18 14:27:50 +01:00 |
|
idr
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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imputeme/vcftoprs
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Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
iqtree
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
ismapper
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
|
isoseq3
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
ivar
|
Patch fix artic/minion and ivar/variants modules (#1326)
|
2022-02-18 17:36:09 +00:00 |
|
jupyternotebook
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
|
kaiju
|
Kaiju2table module (#1545)
|
2022-04-22 11:26:30 +02:00 |
|
kallisto/index
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
kallistobustools
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
khmer/normalizebymedian
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
kleborate
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
kraken2/kraken2
|
update to kraken2: breaking change - output channels renamed (#1525)
|
2022-04-21 14:33:59 +02:00 |
|
krona
|
integrating suggestions from PR comments, including recovery of tests for kronadb and more detailed explanation of input database in yml file
|
2022-05-05 13:51:41 +02:00 |
|
last
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
leehom
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
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legsta
|
add module for legsta (#1319)
|
2022-02-18 17:42:18 -07:00 |
|
lima
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
lissero
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
lofreq
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
macrel/contigs
|
Add new module macrel/contigs (#1109)
|
2021-12-09 13:17:50 +01:00 |
|
macs2/callpeak
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
|
mafft
|
Add MAFFT module (#1351)
|
2022-02-28 00:40:24 -07:00 |
|
malt
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
maltextract
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
manta
|
Revert manta changes (#1518)
|
2022-04-12 10:40:06 +02:00 |
|
mapdamage2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
mash
|
add module for mash dist (#1193)
|
2022-01-04 17:29:49 +01:00 |
|
mashtree
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
maxbin2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
md5sum
|
new module: md5sum
|
2022-05-06 09:20:40 +02:00 |
|
medaka
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
megahit
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
megan/rma2info
|
Add MEGAN/RMA2INFO (#1513)
|
2022-04-12 08:35:36 +02:00 |
|
meningotype
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
meryl/count
|
Update test
|
2022-05-09 08:05:07 +00:00 |
|
metabat2
|
Update metabat2 output channels and compression (#1111)
|
2021-12-09 15:00:32 +01:00 |
|
metaphlan3
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
methyldackel
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
minia
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
miniasm
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
minimap2
|
Update minimap2/align module (#1537)
|
2022-04-26 16:32:20 +02:00 |
|
mlst
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
mobsuite/recon
|
add mobsuite_recon module (#1270)
|
2022-02-18 17:52:38 -07:00 |
|
mosdepth
|
Update mosdepth (#1256)
|
2022-02-09 12:45:55 +00:00 |
|
motus/downloaddb
|
remove the output check for the versions.yml.
|
2022-05-02 08:19:13 -04:00 |
|
msisensor
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
msisensorpro
|
Add msisensorpro (#1267)
|
2022-02-09 21:05:49 +01:00 |
|
mtnucratio
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
multiqc
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
mummer
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
muscle
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
nanolyse
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
nanoplot
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
ncbigenomedownload
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
nextclade
|
Bump Nextclade version to 1.10.1 (#1236)
|
2022-01-27 12:53:14 +00:00 |
|
ngmaster
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
ngscheckmate/ncm
|
New module: NGSCheckMate (#1290)
|
2022-03-11 09:02:10 +00:00 |
|
nucmer
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
optitype
|
Add BAM indexes as input for optitype module. (#1388)
|
2022-03-15 17:02:40 +01:00 |
|
pairix
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
pairtools
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
panaroo/run
|
add module for panaroo, fix pirate tests (#1444)
|
2022-03-24 20:11:04 -06:00 |
|
pangolin
|
Bump Pangolin version to 3.1.20 (#1296)
|
2022-02-15 10:46:20 +00:00 |
|
paraclu
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
pbbam/pbmerge
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
pbccs
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
peddy
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
phantompeakqualtools
|
Add task.ext.args to phantompeakqualtools and finish the module (#1474)
|
2022-03-31 22:59:21 +01:00 |
|
phyloflash
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
picard
|
fix args in nextflow.config
|
2022-04-29 10:21:22 +02:00 |
|
pirate
|
add module for panaroo, fix pirate tests (#1444)
|
2022-03-24 20:11:04 -06:00 |
|
plasmidid
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
plink
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
plink2
|
implement plink2/score module (#1259)
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2022-03-07 13:02:40 -05:00 |
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pmdtools/filter
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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porechop
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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preseq
|
Split preseq lcextrap and ccurve (#1440)
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2022-03-25 17:11:40 +00:00 |
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prinseqplusplus
|
Add PRINSEQPLUSPLUS (#1481)
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2022-04-03 16:06:22 +02:00 |
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prodigal
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
|
prokka
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
|
pycoqc
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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pydamage
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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qcat
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Fix formatting in yaml files, add yamllint config (#1279)
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2022-02-15 11:15:27 +00:00 |
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qualimap
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add qualimap with cram files + remove val from qualimap/bam, instead use empty list as everywhere else (#1320)
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2022-02-18 09:43:53 +01:00 |
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quast
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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racon
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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rapidnj
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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rasusa
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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raven
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Raven assembler (#1087)
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2022-02-01 11:47:01 +01:00 |
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raxmlng
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Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
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rgi/main
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add module for rgi (#1321)
|
2022-02-18 17:23:44 -07:00 |
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rmarkdownnotebook
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Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
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roary
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Update test.yml (#1419)
|
2022-03-19 15:06:21 +00:00 |
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rsem
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Bump STAR version to 2.7.10a for RSEM modules (#1573)
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2022-04-27 19:21:26 +01:00 |
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rseqc
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Provide BAI when running rseqc/tin (#1177)
|
2021-12-17 10:00:09 +00:00 |
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salmon
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
samblaster
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Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
|
samtools
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Remove variable md5sum from the tests
|
2022-05-05 08:32:45 +02:00 |
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scoary
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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seacr/callpeak
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Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
seqkit
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feat: add module for seqkit stats (#1466)
|
2022-03-30 23:01:17 +02:00 |
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seqsero2
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Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
seqtk
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Decrease indent in seqtk/seq versions.yml output (#1384)
|
2022-03-09 11:56:35 -05:00 |
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sequenzautils
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Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
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seqwish/induce
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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shasum
|
added sha256sum
|
2022-05-06 10:28:14 +02:00 |
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shigatyper
|
make prettier
|
2022-04-21 12:55:56 -06:00 |
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shovill
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
sistr
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add module for sistr (#1323)
|
2022-02-18 17:33:48 -07:00 |
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slimfastq
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feat: add module for slimfastq
|
2022-05-02 23:16:59 +02:00 |
|
snapaligner
|
Tool/snap aligner single (#1510)
|
2022-04-12 11:20:35 +02:00 |
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snpdists
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
snpeff
|
greatly simplify syntax (#1121)
|
2021-12-07 11:18:12 +01:00 |
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snpsift/split
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Added new module snpsift/split (#1031)
|
2021-12-17 09:08:14 +01:00 |
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snpsites
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Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
sourmash/sketch
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feat: add sourmash sketch (#1287)
|
2022-02-15 12:30:28 +01:00 |
|
spades
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
spatyper
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
sratools
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
srst2/srst2
|
Update test.yml
|
2022-05-02 18:38:48 -04:00 |
|
ssuissero
|
add module for ssuisero (#1329)
|
2022-02-27 20:04:03 -07:00 |
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stadeniolib/scramble
|
new tool: staden_io_lib (#1499)
|
2022-04-08 09:54:15 -04:00 |
|
staphopiasccmec
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
star
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
stranger
|
add stubs for stranger (#1543)
|
2022-04-22 10:10:43 +02:00 |
|
strelka
|
Update intervals (#1278)
|
2022-02-10 10:34:22 +01:00 |
|
stringtie
|
Rename process from STRINGTIE to STRINGTIE_STRINGTIE (#1546)
|
2022-04-22 15:13:06 +01:00 |
|
subread/featurecounts
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Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
svdb
|
update svdb to version 2.5.2 (#1390)
|
2022-03-21 10:39:34 +01:00 |
|
tabix
|
csi output in TABIX (#1579)
|
2022-04-28 14:41:01 +02:00 |
|
tbprofiler/profile
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Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
tiddit
|
Fix tiddit/sv (#1580)
|
2022-04-28 14:06:38 +02:00 |
|
transdecoder
|
Transdecoder predict (#1251)
|
2022-02-02 09:46:07 +01:00 |
|
trimgalore
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
ucsc
|
ucsc/wigtobigwig: add meta map (#1199)
|
2022-01-11 21:31:37 +00:00 |
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ultra/pipeline
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
umitools
|
Add tests for umitools extract and dedup (#1429)
|
2022-03-25 14:25:07 +00:00 |
|
unicycler
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
untar
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
unzip
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
vardictjava
|
Moved the BED file to the main tuple
|
2022-05-03 15:31:05 +02:00 |
|
variantbam
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
vcfanno
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
vcflib/vcfuniq
|
Add new vcflib/vcfuniq module (#1208)
|
2022-01-14 18:18:11 +00:00 |
|
vcftools
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
yara
|
Add samtools index to yara_mapper module (#1353)
|
2022-03-04 10:08:02 -05:00 |
