nf-core_modules/modules/gatk4
2022-05-16 09:54:40 +02:00
..
applybqsr update gatk version 2022-05-12 15:45:21 +02:00
applybqsrspark update gatk version 2022-05-12 15:45:21 +02:00
applyvqsr update gatk version 2022-05-12 15:45:21 +02:00
baserecalibrator update gatk version 2022-05-12 15:45:21 +02:00
baserecalibratorspark update version also for spark containers 2022-05-12 15:55:11 +02:00
bedtointervallist update gatk version 2022-05-12 15:45:21 +02:00
calculatecontamination update gatk version 2022-05-12 15:45:21 +02:00
combinegvcfs update gatk version 2022-05-12 15:45:21 +02:00
createsequencedictionary update gatk version 2022-05-12 15:45:21 +02:00
createsomaticpanelofnormals update gatk version 2022-05-12 15:45:21 +02:00
estimatelibrarycomplexity update gatk version 2022-05-12 15:45:21 +02:00
fastqtosam update gatk version 2022-05-12 15:45:21 +02:00
filtermutectcalls update gatk version 2022-05-12 15:45:21 +02:00
gatherbqsrreports update gatk version 2022-05-12 15:45:21 +02:00
gatherpileupsummaries update gatk version 2022-05-12 15:45:21 +02:00
genomicsdbimport update gatk version 2022-05-12 15:45:21 +02:00
genotypegvcfs update gatk version 2022-05-12 15:45:21 +02:00
getpileupsummaries leftover fixes from refactoring 2022-05-12 16:47:17 +02:00
haplotypecaller update gatk version 2022-05-12 15:45:21 +02:00
indexfeaturefile update gatk version 2022-05-12 15:45:21 +02:00
intervallisttobed update gatk version 2022-05-12 15:45:21 +02:00
intervallisttools update gatk version 2022-05-12 15:45:21 +02:00
learnreadorientationmodel update gatk version 2022-05-12 15:45:21 +02:00
markduplicates update gatk version 2022-05-12 15:45:21 +02:00
markduplicatesspark revert markduplciatespark changes 2022-05-16 09:54:40 +02:00
mergebamalignment update gatk version 2022-05-12 15:45:21 +02:00
mergemutectstats update gatk version 2022-05-12 15:45:21 +02:00
mergevcfs update gatk version 2022-05-12 15:45:21 +02:00
mutect2 update gatk version 2022-05-12 15:45:21 +02:00
revertsam update gatk version 2022-05-12 15:45:21 +02:00
samtofastq update gatk version 2022-05-12 15:45:21 +02:00
selectvariants update gatk version 2022-05-12 15:45:21 +02:00
splitintervals added tmp-dir + alignment correction 2022-05-13 14:35:22 +02:00
splitncigarreads update gatk version 2022-05-12 15:45:21 +02:00
variantfiltration update gatk version 2022-05-12 15:45:21 +02:00
variantrecalibrator update gatk version 2022-05-12 15:45:21 +02:00