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applybqsr
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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applybqsrspark
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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applyvqsr
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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baserecalibrator
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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baserecalibratorspark
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update version also for spark containers
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2022-05-12 15:55:11 +02:00 |
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bedtointervallist
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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calculatecontamination
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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calibratedragstrmodel
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changed to label to medium
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2022-06-07 12:17:14 +02:00 |
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cnnscorevariants
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remove variables used for test data generation, add tbi
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2022-05-22 13:34:56 +02:00 |
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combinegvcfs
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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composestrtablefile
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spaces fix
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2022-06-01 09:22:09 +02:00 |
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createsequencedictionary
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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createsomaticpanelofnormals
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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estimatelibrarycomplexity
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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fastqtosam
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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filtermutectcalls
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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filtervarianttranches
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fix version
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2022-05-23 12:15:33 +02:00 |
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gatherbqsrreports
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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gatherpileupsummaries
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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genomicsdbimport
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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genotypegvcfs
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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getpileupsummaries
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leftover fixes from refactoring
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2022-05-12 16:47:17 +02:00 |
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haplotypecaller
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added dragstr model to haplotypecaller
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2022-06-02 14:08:09 +02:00 |
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indexfeaturefile
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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intervallisttobed
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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intervallisttools
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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learnreadorientationmodel
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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markduplicates
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Merge branch 'master' into process_lable_markdup
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2022-05-16 15:53:26 +02:00 |
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markduplicatesspark
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revert markduplciatespark changes
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2022-05-16 09:54:40 +02:00 |
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mergebamalignment
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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mergemutectstats
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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mergevcfs
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Removing redundant empty line
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2022-05-31 15:34:34 +00:00 |
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mutect2
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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reblockgvcf
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new module gatk4/reblockgvcf
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2022-06-09 14:56:55 +02:00 |
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revertsam
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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samtofastq
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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selectvariants
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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splitintervals
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added tmp-dir + alignment correction
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2022-05-13 14:35:22 +02:00 |
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splitncigarreads
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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variantfiltration
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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variantrecalibrator
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update gatk version
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2022-05-12 15:45:21 +02:00 |
