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Author	SHA1	Message	Date
Thomas A. Christensen II	6f1aab2667	Spelling corrections in README	2021-04-28 19:30:02 -06:00
Thomas A. Christensen II	affa7796ac	Sanitize redacted name	2021-04-28 19:27:56 -06:00
Thomas A. Christensen II	471bf4314d	Create ONT renaming script	2021-04-22 12:39:45 -06:00
Thomas A. Christensen II	42d3d542b9	Cleanup find command	2021-04-22 11:07:07 -06:00
Thomas A. Christensen II	c7545ae55d	Match ONT's nomenclature for fastqs more closely	2021-04-22 11:03:21 -06:00
Thomas A. Christensen II	ac5be401c1	Remove verbose skip logging	2021-04-20 14:35:20 -06:00
Thomas A. Christensen II	2340aa974b	Force overwrite of destination fastq.gz	2021-04-20 14:34:26 -06:00
Thomas A. Christensen II	798e7693bf	Make copying script combine fastqs	2021-04-20 12:58:48 -06:00
Thomas A. Christensen II	adce9225b2	Cleanup READMEs	2021-04-20 12:57:26 -06:00
Thomas A. Christensen II	9f715bf5cd	Cleanup main README	2021-04-13 13:58:00 -06:00
Thomas A. Christensen II	f4c8b4da97	Cleanup ONT README	2021-04-13 13:56:10 -06:00
Thomas A. Christensen II	ab3f468564	Cleanup limsdatapull README	2021-04-13 13:55:29 -06:00
Thomas A. Christensen II	4cbe3aa529	Cleanup Clearlabs README	2021-04-13 13:54:07 -06:00
Thomas A. Christensen II	8bc8362a62	Add sorting scripts to Illumina README	2021-04-13 13:52:23 -06:00
Thomas A. Christensen II	54b8fddca8	Cleanup ONT README	2021-04-13 13:17:45 -06:00
Thomas A. Christensen II	352604237e	Move src directory to correct location	2021-04-13 12:50:44 -06:00
Thomas A. Christensen II	2865b19abc	Merge branch 'master' of https://github.com/MillironX/wphl-bioinformatics	2021-04-13 12:50:23 -06:00
Thomas A. Christensen II	befca3557e	Correct and cleanup Illumina README	2021-04-13 12:50:14 -06:00
Thomas A. Christensen II	8f8241761d	Create illumina.jl	2021-04-13 11:03:08 -06:00
Thomas A. Christensen II	a2a86ae788	Add script to sort NextSeq runs	2021-04-13 10:06:32 -06:00
Thomas A. Christensen II	d8e1048893	Rename rename-fastqs.jl to sort-miseq.jl	2021-04-13 10:05:59 -06:00
Thomas A. Christensen II	4565960330	Allow two digit numbers	2021-04-08 08:37:18 -06:00
Thomas A. Christensen II	33cce553f5	Create fastq sorting script	2021-04-07 15:04:47 -06:00
Thomas A. Christensen II	5683bbf83c	Update README.md	2021-04-01 10:23:31 -06:00
Thomas A. Christensen II	4b6b243257	Create README.md	2021-04-01 10:12:14 -06:00
Thomas A. Christensen II	3e8f97f71f	Create README.md	2021-04-01 09:59:35 -06:00
Thomas A. Christensen II	95a6eacc2e	Update README.md	2021-04-01 09:23:42 -06:00
Thomas A. Christensen II	ee4a45249b	Update README.md	2021-03-31 11:21:41 -06:00
Thomas A. Christensen II	70c226d0a2	Create README.md	2021-03-31 11:12:39 -06:00
Thomas A. Christensen II	39d4380c3d	Create README.md	2021-03-30 09:15:31 -06:00
Thomas A. Christensen II	254751899d	Fix hardcoded task number to unzip fastqs	2021-03-30 08:52:23 -06:00
Thomas A. Christensen II	25625085d3	Add auto-updating sample database	2021-03-26 14:25:22 -06:00
Thomas A. Christensen II	58eb8743dc	Add secret test file	2021-03-26 14:19:24 -06:00
Thomas A. Christensen II	d3af14dc57	Add 1 git-crypt collaborator ... New collaborators: 3B9A1EA2 Wyoming Public Health Lab NGS <wphl.ngs@wyo.gov>	2021-03-26 14:17:05 -06:00
Thomas A. Christensen II	0898acb8ac	Add 1 git-crypt collaborator ... New collaborators: 4802BC5D Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>	2021-03-26 14:13:13 -06:00
Thomas A. Christensen II	2bb31740bc	Add ONT consolidation script	2021-03-26 14:08:34 -06:00
Thomas A. Christensen II	adf52e1e71	Merge branch 'master' of https://github.com/MillironX/wphl-bioinformatics	2021-03-26 14:05:08 -06:00
Thomas A. Christensen II	4f36be2cf4	Add Illumina Basespace FASTQ downloader script	2021-03-26 14:04:50 -06:00
Thomas A. Christensen II	ce927edc81	Make ont-transfer work on actual GridION	2021-03-26 13:02:38 -06:00
Thomas A. Christensen II	21ea3896ba	Rename ont-transfer.sh to ont-transfer	2021-03-26 12:50:45 -06:00
Thomas A. Christensen II	261e1e01d6	Test if USB drive is inserted	2021-03-23 14:00:18 -06:00
Thomas A. Christensen II	7c316ff08b	Fix sequence generation	2021-03-23 12:25:57 -06:00
Thomas A. Christensen II	79c2ae7882	Correct typo in fast5 logic	2021-03-23 12:23:52 -06:00
Thomas A. Christensen II	1a560be81a	Fix fast5 detection	2021-03-23 12:21:38 -06:00
Thomas A. Christensen II	03934e8144	Add USB drive transfer script for ONT GridION	2021-03-23 11:20:58 -06:00
Thomas A. Christensen II	9735382ac5	Reorganize folder structure	2021-03-23 11:20:19 -06:00
Thomas A. Christensen II	9f940778e4	Make fasta tarball conversion work on Cygwin	2021-03-19 09:44:42 -06:00
Thomas A. Christensen II	7065e22ab3	Convert a ClearLabs fasta tarball on Linux	2021-03-17 21:54:38 -06:00
Thomas A. Christensen II	09c08c9de1	Initial commit	2021-03-17 21:51:44 -06:00