 Thomas A. Christensen II
|
6f1aab2667
|
Spelling corrections in README
|
3 years ago |
|
Thomas A. Christensen II
|
affa7796ac
|
Sanitize `redacted` name
|
3 years ago |
|
Thomas A. Christensen II
|
471bf4314d
|
Create ONT renaming script
|
3 years ago |
|
Thomas A. Christensen II
|
42d3d542b9
|
Cleanup find command
|
3 years ago |
|
Thomas A. Christensen II
|
c7545ae55d
|
Match ONT's nomenclature for fastqs more closely
|
3 years ago |
|
Thomas A. Christensen II
|
ac5be401c1
|
Remove verbose skip logging
|
3 years ago |
|
Thomas A. Christensen II
|
2340aa974b
|
Force overwrite of destination fastq.gz
|
3 years ago |
|
Thomas A. Christensen II
|
798e7693bf
|
Make copying script combine fastqs
|
3 years ago |
|
Thomas A. Christensen II
|
adce9225b2
|
Cleanup READMEs
|
3 years ago |
|
Thomas A. Christensen II
|
9f715bf5cd
|
Cleanup main README
|
3 years ago |
|
Thomas A. Christensen II
|
f4c8b4da97
|
Cleanup ONT README
|
3 years ago |
|
Thomas A. Christensen II
|
ab3f468564
|
Cleanup limsdatapull README
|
3 years ago |
|
Thomas A. Christensen II
|
4cbe3aa529
|
Cleanup Clearlabs README
|
3 years ago |
|
Thomas A. Christensen II
|
8bc8362a62
|
Add sorting scripts to Illumina README
|
3 years ago |
|
Thomas A. Christensen II
|
54b8fddca8
|
Cleanup ONT README
|
3 years ago |
|
Thomas A. Christensen II
|
352604237e
|
Move src directory to correct location
|
3 years ago |
|
Thomas A. Christensen II
|
2865b19abc
|
Merge branch 'master' of https://github.com/MillironX/wphl-bioinformatics
|
3 years ago |
|
Thomas A. Christensen II
|
befca3557e
|
Correct and cleanup Illumina README
|
3 years ago |
|
Thomas A. Christensen II
|
8f8241761d
|
Create illumina.jl
|
3 years ago |
|
Thomas A. Christensen II
|
a2a86ae788
|
Add script to sort NextSeq runs
|
3 years ago |
|
Thomas A. Christensen II
|
d8e1048893
|
Rename rename-fastqs.jl to sort-miseq.jl
|
3 years ago |
|
Thomas A. Christensen II
|
4565960330
|
Allow two digit numbers
|
3 years ago |
|
Thomas A. Christensen II
|
33cce553f5
|
Create fastq sorting script
|
3 years ago |
|
Thomas A. Christensen II
|
5683bbf83c
|
Update README.md
|
3 years ago |
|
Thomas A. Christensen II
|
4b6b243257
|
Create README.md
|
3 years ago |
|
Thomas A. Christensen II
|
3e8f97f71f
|
Create README.md
|
3 years ago |
|
Thomas A. Christensen II
|
95a6eacc2e
|
Update README.md
|
3 years ago |
|
Thomas A. Christensen II
|
ee4a45249b
|
Update README.md
|
3 years ago |
|
Thomas A. Christensen II
|
70c226d0a2
|
Create README.md
|
3 years ago |
|
Thomas A. Christensen II
|
39d4380c3d
|
Create README.md
|
3 years ago |
|
Thomas A. Christensen II
|
254751899d
|
Fix hardcoded task number to unzip fastqs
|
3 years ago |
|
Thomas A. Christensen II
|
25625085d3
|
Add auto-updating sample database
|
3 years ago |
|
Thomas A. Christensen II
|
58eb8743dc
|
Add secret test file
|
3 years ago |
|
Thomas A. Christensen II
|
d3af14dc57
|
Add 1 git-crypt collaborator
New collaborators:
3B9A1EA2 Wyoming Public Health Lab NGS <wphl.ngs@wyo.gov>
|
3 years ago |
|
Thomas A. Christensen II
|
0898acb8ac
|
Add 1 git-crypt collaborator
New collaborators:
4802BC5D Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
|
3 years ago |
|
Thomas A. Christensen II
|
2bb31740bc
|
Add ONT consolidation script
|
3 years ago |
|
Thomas A. Christensen II
|
adf52e1e71
|
Merge branch 'master' of https://github.com/MillironX/wphl-bioinformatics
|
3 years ago |
|
Thomas A. Christensen II
|
4f36be2cf4
|
Add Illumina Basespace FASTQ downloader script
|
3 years ago |
|
Thomas A. Christensen II
|
ce927edc81
|
Make ont-transfer work on actual GridION
|
3 years ago |
|
Thomas A. Christensen II
|
21ea3896ba
|
Rename ont-transfer.sh to ont-transfer
|
3 years ago |
|
Thomas A. Christensen II
|
261e1e01d6
|
Test if USB drive is inserted
|
3 years ago |
|
Thomas A. Christensen II
|
7c316ff08b
|
Fix sequence generation
|
3 years ago |
|
Thomas A. Christensen II
|
79c2ae7882
|
Correct typo in fast5 logic
|
3 years ago |
|
Thomas A. Christensen II
|
1a560be81a
|
Fix fast5 detection
|
3 years ago |
|
Thomas A. Christensen II
|
03934e8144
|
Add USB drive transfer script for ONT GridION
|
3 years ago |
|
Thomas A. Christensen II
|
9735382ac5
|
Reorganize folder structure
|
3 years ago |
|
Thomas A. Christensen II
|
9f940778e4
|
Make fasta tarball conversion work on Cygwin
|
3 years ago |
|
Thomas A. Christensen II
|
7065e22ab3
|
Convert a ClearLabs fasta tarball on Linux
|
3 years ago |
|
Thomas A. Christensen II
|
09c08c9de1
|
Initial commit
|
3 years ago |