millironx/singularity-builds
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Author SHA1 Message Date
Thomas A. Christensen II
12a8ac3490
 		Switch to Ubuntu-based image 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-12-02 10:13:08 -06:00
Thomas A. Christensen II
a5b388b045
 		Switch to Nanosim-compatible scikit-learn version 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-17 09:01:33 -06:00
Thomas A. Christensen II
b00fe59fa4
 		Install available Python packages via apk 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-17 08:38:43 -06:00
Thomas A. Christensen II
79f1b5735a
 		Update metadata 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-17 08:37:39 -06:00
Thomas A. Christensen II
5fcb2b6379
 		Make openblas-dev a permanent dependency 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-16 17:50:54 -06:00
Thomas A. Christensen II
579586a5f6
 		Add building (not running yet) Dockerfile 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-16 17:01:39 -06:00
Thomas A. Christensen II
f17d83d391
 		Replace generic README with specific one 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-16 17:01:28 -06:00
Thomas A. Christensen II
61bf9ba24d
 		Delete all other container definitions 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-16 16:52:01 -06:00
Thomas A. Christensen II
2e84ca3543
 		Move julia_bam-readcounts to its own branch 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-15 12:37:48 -06:00
Thomas A. Christensen II
f94009dd24
 		Add git as a dependency 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-15 12:35:14 -06:00
Thomas A. Christensen II
593b7f222c
 		Add combined Julia and bam-readcounts Dockerfile 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-11-15 12:21:34 -06:00
Thomas A. Christensen II
23b8e08df4
 		Add other container sources to README 2021-09-09 15:44:31 -05:00
Thomas A. Christensen II
41f6653534
 		Add dockerfile for Julia image 2021-09-09 15:12:30 -05:00
Thomas A. Christensen II
4b91b7cc91
 		Add ShoRAH image 2021-09-07 12:27:57 -05:00
Thomas A. Christensen II
9a0114a0c5
 		Add libcurl to permenent dependencies for HTSlib 2021-09-07 11:44:02 -05:00
Thomas A. Christensen II
0362a4b037
 		Add HTSlib image 2021-09-07 09:47:43 -05:00
Thomas A. Christensen II
ed4bc3a895
 		Speed up vscode 2021-09-07 09:46:42 -05:00
Thomas A. Christensen II
96d57bfe78
 		Add CliqueSNV 2021-08-31 14:12:33 -05:00
Thomas A. Christensen II
99897bdfe5
 		Editor tab settings change 2021-08-31 13:43:53 -05:00
Thomas A. Christensen II
d0deed39b6
 		Add minimap2 2021-08-17 11:59:29 -05:00
Thomas A. Christensen II
27208e9755
 		Add Samtools 2021-08-17 11:21:23 -05:00
MillironX
cd967e5d0a
 		Remove Sniffles 2021-08-10 18:22:58 -05:00
MillironX
ca9180cb41
 		Fix Velvet container link 2021-08-10 18:21:12 -05:00
MillironX
d645e426f2
 		Give Velvet a pretty README 2021-08-10 18:20:14 -05:00
MillironX
46a55a5e9a
 		Give VarScan a pretty README 2021-08-10 18:16:35 -05:00
MillironX
54f2a931f8
 		Correct link in Sniffles README 2021-08-10 18:14:28 -05:00
MillironX
a4778b0c1c
 		Give Ray a pretty README 2021-08-10 18:11:20 -05:00
MillironX
06717ee440
 		Correct pigz version number 2021-08-10 18:07:42 -05:00
MillironX
d2e71f9a67
 		Give pigz a pretty README 2021-08-10 18:03:01 -05:00
MillironX
8df4384e22
 		Give Jula a pretty README 2021-08-10 17:57:02 -05:00
MillironX
143933c0b6
 		Give assembly_improvement a pretty README 2021-08-10 17:50:08 -05:00
MillironX
96f1410056
 		Change sniffles base image 2021-08-10 17:35:08 -05:00
MillironX
aa9cef8d49
 		Merge branch 'master' of https://github.com/MillironX/singularity-builds 2021-08-10 17:34:38 -05:00
MillironX
740fb9d40e
 		Make pretty README 2021-08-10 17:34:08 -05:00
Thomas A. Christensen II
6750fd8f96
 		Create LICENSE.md 2021-08-10 16:51:34 -05:00
Thomas A. Christensen II
4ea147eb1a
 		Delete LICENSE 2021-08-10 16:50:25 -05:00
Thomas A. Christensen II
9510919e05
 		Create LICENSE 2021-08-10 16:49:38 -05:00
MillironX
adbcd2b6e5
 		Fix gitattributes 2021-08-10 13:24:05 -05:00
MillironX
89404a5fd8
 		Fix library exclusion bug in Sniffle image 2021-08-10 13:21:02 -05:00
MillironX
847bc7d604
 		Overhaul Sniffles README 2021-08-10 13:20:04 -05:00
MillironX
53dfb25645
 		Declare def files as Singularity 2021-08-10 13:19:04 -05:00
MillironX
d929773394
 		Add base image badge to Sniffles README 2021-08-10 13:02:10 -05:00
MillironX
d0c5b7ecbf
 		Add README for Sniffles 2021-08-10 12:17:18 -05:00
MillironX
6c2b127866
 		Add sniffles 2021-08-10 11:51:12 -05:00
MillironX
28d84a638e
 		Fix typos in Julia definition 2021-08-09 11:36:50 -05:00
MillironX
6763d3254e
 		Update Julia to 1.6.2 and switched to Alpine base image 2021-08-09 11:30:40 -05:00
MillironX
a0377be27a
 		Bump VarScan definition version 2021-08-09 11:09:54 -05:00
MillironX
48683f6b80
 		Add samtools to VarScan image 2021-08-09 11:09:11 -05:00
MillironX
1181f417e0
 		Add varscan image 2021-08-09 09:49:06 -05:00
MillironX
15c82130d9
 		Add Velvet 2021-07-19 10:35:31 -05:00