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Fix type to boolean for flags

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ljmesi 2022-05-03 11:07:23 +02:00
parent 4b2a3789cd
commit 17039ebc6b
1 changed files with 6 additions and 10 deletions
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14
nextflow_schema.json
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@ -431,26 +431,22 @@
}, },
"longread_hostremoval_index": { "longread_hostremoval_index": {
"type": "string", "type": "string",
"default": null "default": "None"
}, },
"save_minimap2_hostremoval_index": { "save_minimap2_hostremoval_index": {
"type": "string", "type": "boolean",
"default": "false",
"description": "Flag for publishing minimap2 host removal index" "description": "Flag for publishing minimap2 host removal index"
}, },
"save_minimap2_hostremoval_mapped": { "save_minimap2_hostremoval_mapped": {
"type": "string", "type": "boolean",
"default": "false",
"description": "Flag for publishinig bam file with all long reads mapped to a reference" "description": "Flag for publishinig bam file with all long reads mapped to a reference"
}, },
"save_samtools_unmapped_bam": { "save_samtools_unmapped_bam": {
"type": "string", "type": "boolean",
"default": "false",
"description": "Flag for publishing bam for reads that did not map to the host reference" "description": "Flag for publishing bam for reads that did not map to the host reference"
}, },
"save_minimap2_unmapped_fq": { "save_minimap2_unmapped_fq": {
"type": "string", "type": "boolean",
"default": "false",
"description": "Flag for publishing fastq files for reads that did not map to the host reference" "description": "Flag for publishing fastq files for reads that did not map to the host reference"
} }
} }