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Add conf for samtools/fastq

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sofstam 2023-03-27 12:42:28 +02:00
parent a3d077fcbc
commit e274823f73
1 changed files with 3 additions and 3 deletions
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6
conf/modules.config
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@ -250,12 +250,12 @@ process {
ext.prefix = { "${meta.id}_${meta.run_accession}.unmapped" } ext.prefix = { "${meta.id}_${meta.run_accession}.unmapped" }
} }
withName: SAMTOOLS_BAM2FQ { withName: SAMTOOLS_FASTQ {
ext.prefix = { "${meta.id}_${meta.run_accession}.unmapped" } ext.prefix = { "${meta.id}_${meta.run_accession}.unmapped" }
publishDir = [ publishDir = [
path: { "${params.outdir}/samtools/bam2fq" }, path: { "${params.outdir}/samtools/fastq" },
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
pattern: '*.fq.gz', pattern: '*.fastq.gz',
enabled: params.save_hostremoval_unmapped enabled: params.save_hostremoval_unmapped
] ]
} }