James A. Fellows Yates
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bca6e645a8
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Merge branch 'dev' into nf-core-template-merge-2.8
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1 year ago |
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nf-core-bot
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ac60d66956
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Template update for nf-core/tools version 2.8
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1 year ago |
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Moritz E. Beber
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66a166dbdc
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docs: tweak parameter schema description
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1 year ago |
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Moritz E. Beber
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08f06b9982
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Apply suggestions from code review
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Moritz E. Beber
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2725fe15a9
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docs: create a schema entry for the new parameter
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1 year ago |
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James A. Fellows Yates
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0245c4880b
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Merge branch 'dev' into final-reads-saving
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1 year ago |
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James Fellows Yates
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ce97a1124e
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Add final documentation
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1 year ago |
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sofstam
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102d53bd75
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Subsitute samtools/bam2fq with samtools/fastq
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1 year ago |
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James Fellows Yates
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b0939c3ae9
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Standardised taxon table and mOTU database docs improvement
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1 year ago |
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James A. Fellows Yates
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eaef6ac9bc
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Apply suggestions from code review
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1 year ago |
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James Fellows Yates
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e49668005f
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Update docs based on feedback and add missing results directories
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1 year ago |
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Sofia Stamouli
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df5303270d
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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fff7453d0c
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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9621d34c4a
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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54af021965
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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sofstam
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99fe8adb1b
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Add helptext
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1 year ago |
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Sofia Stamouli
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e3e465df1f
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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sofstam
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489650feb8
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Linting
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1 year ago |
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sofstam
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2f0c68a833
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Last review suggestions
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1 year ago |
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sofstam
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e18e68faa5
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Apply review suggestion
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1 year ago |
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sofstam
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5dc3cbc278
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Rename taxonomy argument
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1 year ago |
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sofstam
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5a6fcf1f42
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Update taxpasta/merge to version 0.2.0 and add taxonomy argument
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1 year ago |
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James Fellows Yates
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cd4614f387
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Fix typo in schema docs [skip ci]
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1 year ago |
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sofstam
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04bc978ef6
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Remove taxonomy parameter from taxpasta
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1 year ago |
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sofstam
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f0aa89cb87
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Rename taxpasta parameters and remove samplesheet parameter
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1 year ago |
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sofstam
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5ebc22dd29
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Add icon in nextflow_schema.json
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1 year ago |
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sofstam
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27b7171b96
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Apply review suggestions
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1 year ago |
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sofstam
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dad64a688d
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Add documentation for taxpasta module
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1 year ago |
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sofstam
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de6a4214ef
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Add taxpasta_merge to taxprofiler
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1 year ago |
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James Fellows Yates
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059cd17114
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Fix exporting of mapped/unmapped reads for consistency across both short and long reads
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1 year ago |
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sofstam
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4123e06981
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Apply last review suggestions
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1 year ago |
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sofstam
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3e2b181182
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Apply review suggestions
|
1 year ago |
|
James A. Fellows Yates
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1279437aa1
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Apply suggestions from code review
|
1 year ago |
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Sofia Stamouli
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1706555eff
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Prettier
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1 year ago |
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Sofia Stamouli
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24a8da2086
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Fix linting
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1 year ago |
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Sofia Stamouli
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d691b89727
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Merge branch 'dev' into nf-core-template-merge-2.7.2
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1 year ago |
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nf-core-bot
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ab591e01ff
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Template update for nf-core/tools version 2.7.2
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1 year ago |
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James Fellows Yates
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1ccd0a0767
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Merge branch 'dev' into nf-core-template-merge-2.7.1
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1 year ago |
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nf-core-bot
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36f3b5723b
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Template update for nf-core/tools version 2.7.1
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1 year ago |
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James Fellows Yates
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3dba6405c5
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Sets correct default for --shortread_qc_mergepairs
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1 year ago |
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Moritz E. Beber
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b2088bcbb3
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docs: improve description of `shortread_qc_includeunmerged`
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1 year ago |
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Moritz E. Beber
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4529e7e545
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refactor: change parameter exclude unmerged to include
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1 year ago |
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sofstam
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6d140c683a
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Merge branch 'dev' into update_motus
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1 year ago |
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nf-core-bot
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410196c37b
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[automated] Fix linting with Prettier
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1 year ago |
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sofstam
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4800a5f03e
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Update schema
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1 year ago |
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sofstam
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38a818fd17
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Apply review suggestions
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1 year ago |
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sofstam
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1965ade961
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Update schema
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1 year ago |
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sofstam
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e5bb627402
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Apply review suggestions
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1 year ago |
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nf-core-bot
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8067012c01
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[automated] Fix linting with Prettier
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1 year ago |
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James A. Fellows Yates
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4f6eb6fd75
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Merge pull request #153 from mjamy/add-krakenuniq-module
Add krakenuniq module
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1 year ago |