121 commits

Author	SHA1	Message	Date
sofstam	024b683671	Update output and usage	2023-01-17 15:38:56 +01:00
Sofia Stamouli	06575b537d	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-16 12:59:23 +01:00
Sofia Stamouli	0e3f9f0b9a	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-16 12:59:13 +01:00
sofstam	9f21181972	Add documentation for output docs	2023-01-12 15:47:29 +01:00
Sofia Stamouli	3b6be07623	Merge branch 'nf-core:dev' into update_output	2023-01-11 16:56:18 +01:00
Sofia Stamouli	33bce738f5	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-11 16:50:06 +01:00
Sofia Stamouli	a49a907ad1	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-11 16:47:44 +01:00
Sofia Stamouli	953f9585c9	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-11 16:47:18 +01:00
Sofia Stamouli	719fc3cf5d	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2023-01-11 16:46:30 +01:00
Sofia Stamouli	ec9c7cfedc	Prettier	2022-12-22 11:10:54 +01:00
Sofia Stamouli	2f291731c1	Merge branch 'nf-core:dev' into update_usage	2022-12-22 11:09:50 +01:00
Sofia Stamouli	1eeb3b337a	Update usage.md	2022-12-22 11:07:09 +01:00
Sofia Stamouli	29978d83b9	Update centrifuge section	2022-12-22 11:03:49 +01:00
Sofia Stamouli	d6e0d404e3	Update docs/usage.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-22 09:18:00 +01:00
Sofia Stamouli	ba43b0daa4	Update docs/usage.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-21 09:26:38 +01:00
Sofia Stamouli	18c15f8a78	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 20:23:38 +01:00
Sofia Stamouli	fb9de1e212	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 20:23:32 +01:00
Sofia Stamouli	8404c28d08	Review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 20:23:26 +01:00
Sofia Stamouli	2e08c873a0	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:34:19 +01:00
Sofia Stamouli	0cbd0a8013	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:33:35 +01:00
Sofia Stamouli	af7468522a	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:33:18 +01:00
Sofia Stamouli	964771c5f2	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:33:04 +01:00
Sofia Stamouli	3c33ba66ca	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 17:32:13 +01:00
Sofia Stamouli	af8fd18d97	Update docs/output.md ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 15:44:35 +01:00
Sofia Stamouli	b0a6bdee5a	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 15:43:45 +01:00
Sofia Stamouli	c6710db7a9	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 15:42:41 +01:00
Sofia Stamouli	d7c4554b18	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-20 15:42:10 +01:00
Sofia Stamouli	3eb6a29fb0	Merge branch 'nf-core:dev' into update_output	2022-12-20 15:30:19 +01:00
Sofia Stamouli	7be3cfc450	Review suggestions	2022-12-20 15:00:17 +01:00
James Fellows Yates	11db981a88	minor fixes	2022-12-20 13:55:15 +01:00
Sofia Stamouli	644c4ab831	Review suggestions	2022-12-13 12:00:32 +01:00
Sofia Stamouli	3282f5944b	Apply prettier	2022-12-13 11:28:17 +01:00
Sofia Stamouli	c9e4eba62d	Prettier	2022-12-13 11:26:06 +01:00
sofstam	d99706f43d	Move database section and alphabetical order	2022-12-13 11:23:07 +01:00
Sofia Stamouli	f80adee9e2	Review suggestions and prettier	2022-12-13 09:50:05 +01:00
Sofia Stamouli	1eb3da758b	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-13 09:38:09 +01:00
Sofia Stamouli	97e48075c8	Apply review suggestion ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-12-13 09:37:43 +01:00
sofstam	4756dc7f0d	Update output.md	2022-12-12 17:14:57 +01:00
sofstam	b1eb477f33	Update output.md	2022-12-12 17:06:05 +01:00
Sofia Stamouli	a99f89af77	Apply review suggestions	2022-12-12 16:30:28 +01:00
Sofia Stamouli	bd5cd0a897	Prettier	2022-12-12 13:34:53 +01:00
sofstam	896a39e68d	Apply review suggestions	2022-12-12 13:19:59 +01:00
sofstam	c9a6320dac	Merge branch 'update_output' of https://github.com/genomic-medicine-sweden/taxprofiler into update_output ... Conflicts: docs/output.md	2022-12-12 09:13:02 +01:00
James Fellows Yates	4b68e95770	Revert PEP validation back to python samplesheet check	2022-12-12 08:49:13 +01:00
sofstam	b35d26744d	Add classifiers	2022-12-09 17:11:48 +01:00
Sofia Stamouli	6d0b5d0a58	Prettier	2022-12-09 15:38:59 +01:00
Sofia Stamouli	98f3ab9fd1	Apply prettier	2022-12-09 15:35:51 +01:00
sofstam	c5f4c9486a	Start the documentation of output.md	2022-12-09 15:30:11 +01:00
Sofia Stamouli	a622dcaef0	Delete one line	2022-12-09 13:59:37 +01:00
sofstam	5373c58331	Merge branch 'dev' into update_usage	2022-12-09 13:05:42 +01:00